Articles with public access mandates - Ivo HofackerLearn more
Available somewhere: 108
Tristetraprolin binding site atlas in the macrophage transcriptome reveals a switch for inflammation resolution
V Sedlyarov, J Fallmann, F Ebner, J Huemer, L Sneezum, M Ivin, ...
Molecular systems biology 12 (5), 868, 2016
Mandates: Austrian Science Fund
De novo prediction of structured RNAs from genomic sequences
J Gorodkin, IL Hofacker, E Torarinsson, Z Yao, JH Havgaard, WL Ruzzo
Trends in biotechnology 28 (1), 9-19, 2010
Mandates: US National Institutes of Health
Challenges in RNA virus bioinformatics
M Marz, N Beerenwinkel, C Drosten, M Fricke, D Frishman, IL Hofacker, ...
Bioinformatics 30 (13), 1793-1799, 2014
Mandates: Swiss National Science Foundation, German Research Foundation
Algebraic comparison of metabolic networks, phylogenetic inference, and metabolic innovation
CV Forst, C Flamm, IL Hofacker, PF Stadler
BMC bioinformatics 7, 1-11, 2006
Mandates: German Research Foundation
TSSAR: TSS annotation regime for dRNA-seq data
F Amman, MT Wolfinger, R Lorenz, IL Hofacker, PF Stadler, S Findeiß
BMC bioinformatics 15, 1-11, 2014
Mandates: Austrian Science Fund, German Research Foundation
Differential transcriptional responses to Ebola and Marburg virus infection in bat and human cells
M Hölzer, V Krähling, F Amman, E Barth, SH Bernhart, VAO Carmelo, ...
Scientific reports 6 (1), 34589, 2016
Mandates: Austrian Science Fund, German Research Foundation, Danish Council for …
Zinc-finger protein CNBP alters the 3-D structure of lncRNA Braveheart in solution
DN Kim, BC Thiel, T Mrozowich, SP Hennelly, IL Hofacker, TR Patel, ...
Nature communications 11 (1), 148, 2020
Mandates: US Department of Energy, US National Institutes of Health, Natural Sciences …
BarMap: RNA folding on dynamic energy landscapes
IL Hofacker, C Flamm, C Heine, MT Wolfinger, G Scheuermann, ...
Rna 16 (7), 1308-1316, 2010
Mandates: German Research Foundation
Fast accessibility-based prediction of RNA–RNA interactions
H Tafer, F Amman, F Eggenhofer, PF Stadler, IL Hofacker
Bioinformatics 27 (14), 1934-1940, 2011
Mandates: German Research Foundation
Functional RNA structures in the 3′ UTR of tick-borne, insect-specific and no-known-vector flaviviruses
R Ochsenreiter, IL Hofacker, MT Wolfinger
Viruses 11 (3), 298, 2019
Mandates: Austrian Science Fund
Basin Hopping Graph: a computational framework to characterize RNA folding landscapes
M Kucharik, IL Hofacker, PF Stadler, J Qin
Bioinformatics 30 (14), 2009-2017, 2014
Mandates: Austrian Science Fund, German Research Foundation
Impact of Hfq on the Bacillus subtilis Transcriptome
H Hämmerle, F Amman, B Večerek, J Stülke, I Hofacker, U Blaesi
PloS one 9 (6), e98661, 2014
Mandates: Austrian Science Fund
Control of cognate sense mRNA translation by cis-natural antisense RNAs
J Deforges, RS Reis, P Jacquet, S Sheppard, VP Gadekar, G Hart-Smith, ...
Plant physiology, pp. 00043.2019, 2019
Mandates: Swiss National Science Foundation
NMR structural profiling of transcriptional intermediates reveals riboswitch regulation by metastable RNA conformations
C Helmling, A Wacker, MT Wolfinger, IL Hofacker, M Hengesbach, ...
Journal of the American Chemical Society 139 (7), 2647-2656, 2017
Mandates: Austrian Science Fund, German Research Foundation
2D meets 4G: G-quadruplexes in RNA secondary structure prediction
R Lorenz, SH Bernhart, J Qin, CH zu Siederdissen, A Tanzer, F Amman, ...
IEEE/ACM transactions on computational biology and bioinformatics 10 (4 …, 2013
Mandates: Austrian Science Fund, German Research Foundation
Arthropod 7SK rna
AR Gruber, C Kilgus, A Mosig, IL Hofacker, W Hennig, PF Stadler
Molecular biology and evolution 25 (9), 1923-1930, 2008
Mandates: German Research Foundation
Invertebrate 7sk snrnas
AR Gruber, D Koper-Emde, M Marz, H Tafer, S Bernhart, G Obernosterer, ...
Journal of molecular evolution 66, 107-115, 2008
Mandates: German Research Foundation
Updated phylogeny of chikungunya virus suggests lineage-specific RNA architecture
A de Bernardi Schneider, R Ochsenreiter, R Hostager, IL Hofacker, ...
Viruses 11 (9), 798, 2019
Mandates: US National Institutes of Health, Austrian Science Fund
Translational control by RNA-RNA interaction: Improved computation of RNA-RNA binding thermodynamics
U Mückstein, H Tafer, SH Bernhart, M Hernandez-Rosales, J Vogel, ...
Bioinformatics Research and Development: Second International Conference …, 2008
Mandates: German Research Foundation
Model-free RNA sequence and structure alignment informed by SHAPE probing reveals a conserved alternate secondary structure for 16S rRNA
CA Lavender, R Lorenz, G Zhang, R Tamayo, IL Hofacker, KM Weeks
PLOS computational biology 11 (5), e1004126, 2015
Mandates: US National Institutes of Health, Austrian Science Fund
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