| Ordinal optimization of DEDS YC Ho, RS Sreenivas, P Vakili Discrete event dynamic systems 2 (1), 61-88, 1992 | 592 | 1992 |
| Achieving reliability and high accuracy in automated protein docking: ClusPro, PIPER, SDU, and stability analysis in CAPRI rounds 13–19 D Kozakov, DR Hall, D Beglov, R Brenke, SR Comeau, Y Shen, K Li, ... Proteins: Structure, Function, and Bioinformatics 78 (15), 3124-3130, 2010 | 297 | 2010 |
| On the value of flexibility in R&D projects LP Santiago, P Vakili Management Science 51 (8), 1206-1218, 2005 | 148 | 2005 |
| Optimality of hedging point policies in the production control of failure prone manufacturing systems JQ Hu, P Vakili, GX Yu IEEE Transactions on Automatic Control 39 (9), 1875-1880, 1994 | 137 | 1994 |
| Using a standard clock technique for efficient simulation P Vakili Operations Research Letters 10 (8), 445-452, 1991 | 118 | 1991 |
| Encounter complexes and dimensionality reduction in protein–protein association D Kozakov, K Li, DR Hall, D Beglov, J Zheng, P Vakili, ... Elife 3, e01370, 2014 | 77 | 2014 |
| Massively parallel and distributed simulation of a class of discrete event systems: A different perspective P Vakili ACM Transactions on Modeling and Computer Simulation (TOMACS) 2 (3), 214-238, 1992 | 66 | 1992 |
| Protein docking by the underestimation of free energy funnels in the space of encounter complexes Y Shen, IC Paschalidis, P Vakili, S Vajda PLoS computational biology 4 (10), e1000191, 2008 | 50 | 2008 |
| Energy minimization on manifolds for docking flexible molecules H Mirzaei, S Zarbafian, E Villar, S Mottarella, D Beglov, S Vajda, ... Journal of chemical theory and computation 11 (3), 1063-1076, 2015 | 46 | 2015 |
| A non-myopic utility function for statistical global optimization algorithms S Streltsov, P Vakili Journal of Global Optimization 14, 283-298, 1999 | 43 | 1999 |
| On the efficient generation of discrete event sample paths under different system parameter values YC Ho, S Li, P Vakili Mathematics and computers in simulation 30 (4), 347-370, 1988 | 40 | 1988 |
| Rigid body energy minimization on manifolds for molecular docking H Mirzaei, D Beglov, IC Paschalidis, S Vajda, P Vakili, D Kozakov Journal of chemical theory and computation 8 (11), 4374-4380, 2012 | 39 | 2012 |
| Massively parallel simulation of a class of discrete event systems P Vakili, L Mollamustafaoglu, YC Ho [Proceedings 1992] The Fourth Symposium on the Frontiers of Massively …, 1992 | 32 | 1992 |
| Control variate technique: A constructive approach T Borogovac, P Vakili 2008 Winter Simulation Conference, 320-327, 2008 | 31 | 2008 |
| SDU: A semidefinite programming-based underestimation method for stochastic global optimization in protein docking IC Paschalidis, Y Shen, P Vakili, S Vajda IEEE transactions on automatic control 52 (4), 664-676, 2007 | 30 | 2007 |
| Capacity and Production Managment in a single Product Manufacturing system JQ Hu, P Vakili, L Huang Annals of Operations Research 125, 191-204, 2004 | 29 | 2004 |
| Optimal project selection and budget allocation for R&D portfolios LP Santiago, P Vakili A Unifying Discipline for Melting the Boundaries Technology Management:, 275-281, 2005 | 25 | 2005 |
| Optimal control of a multi-state manufacturing system: Control of production rate and temporary increase in capacity L Huang, JQ Hu, P Vakili Proceedings of the 37th IEEE Conference on Decision and Control (Cat. No …, 1998 | 23 | 1998 |
| Variance reduction algorithms for parallel replicated simulation of uniformized Markov chains S Streltsov, P Vakili Discrete Event Dynamic Systems 6 (2), 159-180, 1996 | 22 | 1996 |
| Comparing Markov chains simulated in parallel P Glasserman, P Vakili Probability in the Engineering and Informational Sciences 8 (3), 309-326, 1994 | 22 | 1994 |
