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Siewert J. Marrink
Siewert J. Marrink
Professor of Molecular Dynamics, University of Groningen
Bestätigte E-Mail-Adresse bei rug.nl - Startseite
Titel
Zitiert von
Zitiert von
Jahr
The MARTINI force field: coarse grained model for biomolecular simulations
SJ Marrink, HJ Risselada, S Yefimov, DP Tieleman, AH De Vries
The Journal of Physical Chemistry B 111 (27), 7812-7824, 2007
59452007
The MARTINI coarse-grained force field: extension to proteins
L Monticelli, SK Kandasamy, X Periole, RG Larson, DP Tieleman, ...
Journal of Chemical Theory and Computation 4 (5), 819-834, 2008
27512008
Coarse grained model for semiquantitative lipid simulations
SJ Marrink, AH De Vries, AE Mark
The Journal of Physical Chemistry B 108 (2), 750-760, 2004
26042004
Improved parameters for the MARTINI coarse-grained protein force field
DH de Jong, G Singh, WFD Bennett, C Arnarez, TA Wassenaar, ...
Journal of Chemical Theory and Computation 9 (1), 687-697, 2013
13982013
Perspective on the MARTINI model
SJ Marrink, DP Tieleman
Chemical Society Reviews 42 (16), 6801-6822, 2013
12552013
A computer perspective of membranes: molecular dynamics studies of lipid bilayer systems
DP Tieleman, SJ Marrink, HJC Berendsen
Biochimica et Biophysica Acta (BBA)-Reviews on Biomembranes 1331 (3), 235-270, 1997
10221997
Computational Lipidomics with insane: A Versatile Tool for Generating Custom Membranes for Molecular Simulations
TA Wassenaar, HI Ingólfsson, RA Bockmann, DP Tieleman, SJ Marrink
Journal of chemical theory and computation 11 (5), 2144-2155, 2015
10082015
Simulation of water transport through a lipid membrane
SJ Marrink, HJC Berendsen
The Journal of Physical Chemistry 98 (15), 4155-4168, 1994
9701994
Polarizable water model for the coarse-grained MARTINI force field
SO Yesylevskyy, LV Schäfer, D Sengupta, SJ Marrink
PLoS computational biology 6 (6), e1000810, 2010
9412010
Lipid organization of the plasma membrane
HI Ingólfsson, MN Melo, FJ Van Eerden, C Arnarez, CA Lopez, ...
Journal of the American Chemical Society 136 (41), 14554-14559, 2014
9122014
Martini 3: a general purpose force field for coarse-grained molecular dynamics
PCT Souza, R Alessandri, J Barnoud, S Thallmair, I Faustino, ...
Nature Methods 18, 382–388, 2021
7612021
Combining an elastic network with a coarse-grained molecular force field: structure, dynamics, and intermolecular recognition
X Periole, M Cavalli, SJ Marrink, MA Ceruso
Journal of chemical theory and computation 5 (9), 2531-2543, 2009
7072009
Going backward: A flexible geometric approach to reverse transformation from coarse grained to atomistic models
TA Wassenaar, K Pluhackova, RA Böckmann, SJ Marrink, DP Tieleman
Journal of Chemical Theory and Computation 10, 676-690, 2014
6812014
Toroidal pores formed by antimicrobial peptides show significant disorder
D Sengupta, H Leontiadou, AE Mark, SJ Marrink
Biochimica et Biophysica Acta (BBA)-Biomembranes 1778 (10), 2308-2317, 2008
6722008
The molecular face of lipid rafts in model membranes
HJ Risselada, SJ Marrink
Proceedings of the National Academy of Sciences 105 (45), 17367-17372, 2008
6492008
Computational Modeling of Realistic Cell Membranes
SJ Marrink, V Corradi, PCT Souza, HI Ingólfsson, DP Tieleman, ...
Chemical Reviews 119 (9), 6184–6226, 2019
6172019
The power of coarse graining in biomolecular simulations
HI Ingólfsson, CA Lopez, JJ Uusitalo, DH Jong, SM Gopal, X Periole, ...
Wiley Interdisciplinary Reviews: Computational Molecular Science 4 (3), 225–248, 2014
6142014
Antimicrobial peptides in action
H Leontiadou, AE Mark, SJ Marrink
Journal of the American Chemical Society 128 (37), 12156-12161, 2006
5612006
Simulation of pore formation in lipid bilayers by mechanical stress and electric fields
DP Tieleman, H Leontiadou, AE Mark, SJ Marrink
Journal of the American Chemical Society 125 (21), 6382-6383, 2003
5532003
Permeation process of small molecules across lipid membranes studied by molecular dynamics simulations
SJ Marrink, HJC Berendsen
The Journal of Physical Chemistry 100 (41), 16729-16738, 1996
5371996
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