| Discovery of Vibrio cholerae in Urban Sewage in Copenhagen, Denmark C Brinch, S Otani, P Munk, M van den Beld, E Franz, FM Aarestrup Microbial Ecology 87 (1), 102, 2024 | | 2024 |
| NanoMGT: Marker gene typing of low complexity mono-species metagenomic samples using noisy long reads MB Hallgren, PTLC Clausen, FM Aarestrup Biology Methods and Protocols, bpae057, 2024 | | 2024 |
| Utilizing co-abundances of antimicrobial resistance genes to identify potential co-selection in the resistome HM Martiny, P Munk, C Brinch, FM Aarestrup, ML Calle, TN Petersen Microbiology Spectrum, e04108-23, 2024 | 1 | 2024 |
| Complete genome sequences of Cytobacillus sp., Domibacillus sp., Enterobacter sp., Neisseria sp., Pseudomonas sp., and Streptococcus sp. strains from … J Szarvas, S Nag, S Otani, LEK Birkedahl, FD Møller, S Asante-Sefa, ... Microbiology Resource Announcements, e01040-23, 2024 | | 2024 |
| Metagenomic analysis of sewage for surveillance of bacterial pathogens: A release experiment to determine sensitivity S Kohle, TN Petersen, H Vigre, MHK Johansson, FM Aarestrup Plos one 19 (5), e0300733, 2024 | | 2024 |
| Mapping the distribution and describing the first cases from an ongoing outbreak of a New Strain of mpox in South Kivu, Eastern Democratic Republic of Congo between September … LM Masirika, DF Nieuwenhuijse, P Ndishimye, JC Udahemuka, ... | 2 | 2024 |
| Genomic analysis of Salmonella isolated from canal water in Bangkok, Thailand J Toyting, N Nuanmuang, F Utrarachkij, N Supha, Y Thongpanich, ... Microbiology Spectrum 12 (5), e04216-23, 2024 | 1 | 2024 |
| The European livestock resistome P Munk, D Yang, T Röder, L Maier, TN Petersen, ASR Duarte, ... Msystems 9 (4), e01328-23, 2024 | | 2024 |
| A novel metagenomic approach uncovers phage genes as markers for increased disinfectant tolerance in mixed Listeria monocytogenes communities AK Karlsmose, M Ivanova, ML Kragh, JS Kjeldgaard, S Otani, ... Infection, Genetics and Evolution 119, 105582, 2024 | | 2024 |
| Dispersion of antimicrobial resistant bacteria in pig farms and in the surrounding environment D Scicchitano, D Leuzzi, G Babbi, G Palladino, S Turroni, CC Laczny, ... Animal Microbiome 6 (1), 17, 2024 | 1 | 2024 |
| Ongoing mpox outbreak in Kamituga, South Kivu province, associated with monkeypox virus of a novel Clade I sub-lineage, Democratic Republic of the Congo, 2024 LM Masirika, JC Udahemuka, L Schuele, P Ndishimye, S Otani, ... Eurosurveillance 29 (11), 2400106, 2024 | 10 | 2024 |
| VirulenceFinder for Enterococcus faecium and Enterococcus lactis: an enhanced database for detection of putative virulence markers by using whole-genome … L Roer, H Kaya, AP Tedim, C Novais, TM Coque, FM Aarestrup, L Peixe, ... Microbiology Spectrum 12 (3), e03724-23, 2024 | 3 | 2024 |
| ARGprofiler—a pipeline for large-scale analysis of antimicrobial resistance genes and their flanking regions in metagenomic datasets HM Martiny, N Pyrounakis, TN Petersen, O Lukjančenko, FM Aarestrup, ... Bioinformatics 40 (3), btae086, 2024 | | 2024 |
| SpanSeq: Similarity-based sequence data splitting method for improved development and assessment of deep learning projects AF Florensa, JJA Armenteros, H Nielsen, FM Aarestrup, PTLC Clausen arXiv preprint arXiv:2402.14482, 2024 | | 2024 |
| Routes of dispersion of antibiotic resistance genes from the poultry farm system D Scicchitano, G Babbi, G Palladino, S Turroni, YT Mekonnen, C Laczny, ... Science of the Total Environment 912, 169086, 2024 | | 2024 |
| The first complete genome sequence of Staphylococcus aureus ST5477 P Leekitcharoenphon, S Otani, J Szarvas, T Mzee, H Kumburu, FD Møller, ... Microbiology Resource Announcements 13 (2), e01004-23, 2024 | | 2024 |
| Mobilisation and analyses of publicly available SARS-CoV-2 data for pandemic responses N Rahman, C O'cathail, A Zyoud, A Sokolov, B Oude Munnink, B Grüning, ... Microbial genomics 10 (2), 001188, 2024 | 7 | 2024 |
| SpanSeq: Similarity-based sequence data splitting method for improved development and assessment of deep learning projects A Ferrer Florensa, J Juan Almagro Armenteros, H Nielsen, ... arXiv e-prints, arXiv: 2402.14482, 2024 | | 2024 |
| Predicting Listeria monocytogenes virulence potential using whole genome sequencing and machine learning A Gmeiner, PMK Njage, LT Hansen, FM Aarestrup, P Leekitcharoenphon International Journal of Food Microbiology 410, 110491, 2024 | 4 | 2024 |
| West Nile virus spread in Europe: Phylogeographic pattern analysis and key drivers L Lu, F Zhang, BB Oude Munnink, E Munger, RS Sikkema, S Pappa, ... PLoS Pathogens 20 (1), e1011880, 2024 | 11 | 2024 |
Henrik HasmanStatens Serum InstitutVerified email at hasman.dk