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| Monoallelically expressed noncoding RNAs form nucleolar territories on NOR-containing chromosomes and regulate rRNA expression Q Hao, M Liu, SV Daulatabad, S Gaffari, YJ Song, R Srivastava, ... Elife 13, e80684, 2024 | 2 | 2024 |
| Standardized Nomenclature and Reporting for PacBio HiFi Sequencing and Analysis of rAAV Gene Therapy Vectors E Talevich, E Tseng, A Diallo, N Sellami, A Elliott, BL Cantarel, N Tonthat, ... bioRxiv, 2024.05. 07.592296, 2024 | | 2024 |
| P188: Synchronized long-read genome, methylene, epigenome, and transcriptome for a putative small fiber peripheral polyneuropathy research study M Glanz, N Gonzaludo, E Tseng, M Merritt, E Wang Genetics in Medicine Open 2, 101085, 2024 | | 2024 |
| Mechanistic Elucidation of the Tumor-Promoting Role of Carcinoembryonic Antigen-Related Cell Adhesion Molecule 1 in B-Cell Receptor Signaling in Mantle Cell Lymphoma S Xavier, V Nguyen, V Khairnar, A Phan, L Yang, M Nelson, E Tseng, A Li, ... Blood 142, 720, 2023 | | 2023 |
| SQANTI3: curation of long-read transcriptomes for accurate identification of known and novel isoforms A Conesa, F Pardo-Palacios, A Arzalluz-Luque, L Kondratova, P Salguero, ... | | 2023 |
| Transformation of alignment files improves performance of variant callers for long-read RNA sequencing data VBC de Souza, BT Jordan, E Tseng, EA Nelson, KK Hirschi, ... Genome Biology 24 (1), 91, 2023 | 10 | 2023 |
| Abstract LB078: pbfusion: Detecting gene-fusion and other transcriptional abnormalities using PacBio HiFi data R Volden, Z Kronenberg, A Gillmor, T Verhey, M Monument, D Senger, ... Cancer Research 83 (8_Supplement), LB078-LB078, 2023 | 2 | 2023 |
| Structure and Alternative Splicing of the Antisense FMR1 (ASFMR1) Gene M Zafarullah, J Li, E Tseng, F Tassone Molecular neurobiology 60 (4), 2051-2061, 2023 | 3 | 2023 |
| Long read isoform sequencing reveals hidden transcriptional complexity between cattle subspecies Y Ren, E Tseng, TPL Smith, S Hiendleder, JL Williams, WY Low BMC genomics 24 (1), 108, 2023 | 3 | 2023 |
| RNA-seq data science: From raw data to effective interpretation D Deshpande, K Chhugani, Y Chang, A Karlsberg, C Loeffler, J Zhang, ... Frontiers in Genetics 14, 997383, 2023 | 40 | 2023 |
| Alternative splicing and genetic variation of mhc-e: implications for rhesus cytomegalovirus-based vaccines H Brochu, R Wang, T Tollison, CW Pyo, A Thomas, E Tseng, L Law, ... Communications Biology 5 (1), 1387, 2022 | 6 | 2022 |
| DIFFERENTIAL ISOFORM USAGE IN SCHIZOPHRENIA A Abrantes, NE Ancalade, S Sekle, F Memic, A Dijkstra, E Tseng, ... European Neuropsychopharmacology 63, e156, 2022 | | 2022 |
| I-CONVEX: Fast and Accurate de Novo Transcriptome Recovery from Long Reads S Baharlouei, M Razaviyayn, E Tseng, D Tse Joint European Conference on Machine Learning and Knowledge Discovery in …, 2022 | 1 | 2022 |
| Generating lineage-resolved, complete metagenome-assembled genomes from complex microbial communities DM Bickhart, M Kolmogorov, E Tseng, DM Portik, A Korobeynikov, ... Nature biotechnology 40 (5), 711-719, 2022 | 136 | 2022 |
| Long-read isoform sequencing reveals tissue-specific isoform expression between active and hibernating brown bears (Ursus arctos) E Tseng, JG Underwood, BD Evans Hutzenbiler, S Trojahn, B Kingham, ... G3 12 (3), jkab422, 2022 | 11 | 2022 |
| Full-length transcript sequencing of human and mouse cerebral cortex identifies widespread isoform diversity and alternative splicing SK Leung, AR Jeffries, I Castanho, BT Jordan, K Moore, JP Davies, ... Cell reports 37 (7), 2021 | 96 | 2021 |
| An anchored chromosome‐scale genome assembly of spinach improves annotation and reveals extensive gene rearrangements in euasterids AM Hulse‐Kemp, H Bostan, S Chen, H Ashrafi, K Stoffel, W Sanseverino, ... The Plant Genome 14 (2), e20101, 2021 | 19 | 2021 |
| Generation of lineage-resolved complete metagenome-assembled genomes by precision phasing DM Bickhart, M Kolmogorov, E Tseng, DM Portik, A Korobeynikov, ... bioRxiv, 2021.05. 04.442591, 2021 | 14 | 2021 |
| VCFCons: a versatile VCF-based consensus sequence generator for small genomes E Tseng, Q Zeng, L Iyer bioRxiv, 2021.02. 26.433111, 2021 | 2 | 2021 |
