| Are RNA networks scale-free? P Clote Journal of mathematical biology 80 (5), 1291-1321, 2020 | 12 | 2020 |
| RNAmountAlign: efficient software for local, global, semiglobal pairwise and multiple RNA sequence/structure alignment AH Bayegan, P Clote PLoS One 15 (1), e0227177, 2020 | 6 | 2020 |
| Small-world networks and RNA secondary structures D Surujon, Y Ponty, P Clote Journal of Computational Biology 26 (1), 16-26, 2019 | 3 | 2019 |
| On the scale-free nature of RNA secondary structure networks P Clote arXiv preprint arXiv:1807.00215, 2018 | 1 | 2018 |
| RNA folding kinetics using Monte Carlo and Gillespie algorithms P Clote, AH Bayegan Journal of Mathematical Biology 76 (5), 1195-1227, 2018 | 3 | 2018 |
| Minimum length RNA folding trajectories AH Bayegan, P Clote arXiv preprint arXiv:1802.06328, 2018 | 1 | 2018 |
| An IP algorithm for RNA folding trajectories AH Bayegan, P Clote 17th International Workshop on Algorithms in Bioinformatics (WABI 2017), 2017 | 3 | 2017 |
| New tools to analyze overlapping coding regions AH Bayegan, JA Garcia-Martin, P Clote BMC bioinformatics 17, 1-15, 2016 | 2 | 2016 |
| RNAdualPF: software to compute the dual partition function with sample applications in molecular evolution theory JA Garcia-Martin, AH Bayegan, I Dotu, P Clote BMC bioinformatics 17, 1-24, 2016 | 15 | 2016 |
| RNAiFold2T: constraint programming design of thermo-IRES switches JA Garcia-Martin, I Dotu, J Fernandez-Chamorro, G Lozano, J Ramajo, ... Bioinformatics 32 (12), i360-i368, 2016 | 11 | 2016 |
| Designing synthetic RNAs to determine the relevance of structural motifs in picornavirus IRES elements J Fernandez-Chamorro, G Lozano, JA Garcia-Martin, J Ramajo, I Dotu, ... Scientific Reports 6 (1), 24243, 2016 | 9 | 2016 |
| RNA thermodynamic structural entropy JA Garcia-Martin, P Clote PloS one 10 (11), e0137859, 2015 | 24 | 2015 |
| Network properties of the ensemble of RNA structures P Clote, A Bayegan PLoS One 10 (10), e0139476, 2015 | 7 | 2015 |
| Structural diversity measures for RNA AH Bayegan, P Clote Proceedings of the 6th ACM Conference on Bioinformatics, Computational …, 2015 | | 2015 |
| RNA thermodynamic conformational entropy JA Garcia Martin, P Clote Proceedings of the 6th ACM Conference on Bioinformatics, Computational …, 2015 | | 2015 |
| Asymptotic connectivity for the network of RNA secondary structures P Clote arXiv preprint arXiv:1508.03815, 2015 | 2 | 2015 |
| RNAiFold 2.0: a web server and software to design custom and Rfam-based RNA molecules JA Garcia-Martin, I Dotu, P Clote Nucleic Acids Research 43 (W1), W513-W521, 2015 | 39 | 2015 |
| Fast, approximate kinetics of RNA folding E Senter, P Clote Journal of Computational Biology 22 (2), 124-144, 2015 | 9 | 2015 |
| Expected degree for RNA secondary structure networks P Clote Journal of Computational Chemistry 36 (2), 103-117, 2015 | 9 | 2015 |
| Computational prediction of riboswitches P Clote Methods in Enzymology 553, 287-312, 2015 | 6 | 2015 |
ivan dotuMoirai BiodesignVerified email at moiraibiodesign.com
