| An interpretable deep learning model predicts RNA–small molecule binding sites W Xi, R Wang, L Wang, X Ye, M Liu, T Sakurai Future Generation Computer Systems 159, 557-566, 2024 | | 2024 |
| Moreau-Yoshida variational transport: a general framework for solving regularized distributional optimization problems DH Nguyen, T Sakurai Machine Learning, 1-28, 2024 | | 2024 |
| Collaborative causal inference on distributed data Y Kawamata, R Motai, Y Okada, A Imakura, T Sakurai Expert Systems with Applications 244, 123024, 2024 | 3 | 2024 |
| MoFormer: Multi-objective Antimicrobial Peptide Generation Based on Conditional Transformer Joint Multi-modal Fusion Descriptor L Wang, X Fu, J Yang, X Zhang, X Ye, Y Liu, T Sakurai, X Zeng arXiv preprint arXiv:2406.02610, 2024 | | 2024 |
| CodLncScape Provides a Self‐Enriching Framework for the Systematic Collection and Exploration of Coding LncRNAs (Adv. Sci. 22/2024) T Liu, H Qiao, Z Wang, X Yang, X Pan, Y Yang, X Ye, T Sakurai, H Lin, ... Advanced Science 11 (22), 2470129, 2024 | | 2024 |
| Toward the Application of Differential Privacy to Data Collaboration H Yamashiro, K Omote, A Imakura, T Sakurai IEEE Access, 2024 | | 2024 |
| Integrated convolution and self-attention for improving peptide toxicity prediction S Jiao, X Ye, T Sakurai, Q Zou, R Liu Bioinformatics 40 (5), btae297, 2024 | | 2024 |
| CodLncScape Provides a Self‐Enriching Framework for the Systematic Collection and Exploration of Coding LncRNAs T Liu, H Qiao, Z Wang, X Yang, X Pan, Y Yang, X Ye, T Sakurai, H Lin, ... Advanced Science, 2400009, 2024 | 1 | 2024 |
| A BERT-based model for the prediction of lncRNA subcellular localization in Homo sapiens ZY Zhang, Z Zhang, X Ye, T Sakurai, H Lin International Journal of Biological Macromolecules 265, 130659, 2024 | | 2024 |
| Distributed data integration device, distributed data integration method, and program A Imakura, T Sakurai US Patent 11,934,558, 2024 | | 2024 |
| Numerical Analysis for Data Relationship T Sakurai, Y Futamura, A Imakura, X Ye Advanced Mathematical Science for Mobility Society, 61-77, 2024 | | 2024 |
| Multi-party collaborative drug discovery via federated learning D Huang, X Ye, T Sakurai Computers in Biology and Medicine 171, 108181, 2024 | | 2024 |
| Estimation of conditional average treatment effects on distributed data: A privacy-preserving approach Y Kawamata, R Motai, Y Okada, A Imakura, T Sakurai arXiv preprint arXiv:2402.02672, 2024 | | 2024 |
| Extraction of local structure differences in silica based on unsupervised learning AKA Lu, J Lin, Y Futamura, T Sakurai, R Tamura, T Miyazaki Physical Chemistry Chemical Physics 26 (15), 11657-11666, 2024 | | 2024 |
| DenoiseST: A dual-channel unsupervised deep learning-based denoising method to identify spatial domains and functionally variable genes in spatial transcriptomics Y Cui, R Wang, X Zeng, Y Cui, Z Zhu, K Nakai, X Ye, T Sakurai, L Wei bioRxiv, 2024.03. 04.583438, 2024 | | 2024 |
| CLOP-hERG: The Contrastive Learning Optimized Pre-Trained Model for Representation Learning in Predicting Drug-Induced hERG Channel Blockers S He, X Ye, T Sakurai | | 2024 |
| FIAMol-AB: A feature fusion and attention-based deep learning method for enhanced antibiotic discovery S He, X Ye, L Dou, T Sakurai Computers in Biology and Medicine 168, 107762, 2024 | | 2024 |
| Feature amount selection device, feature amount selection method, and program T Sakurai, Y Futamura, M Matsuda US Patent App. 18/252,819, 2023 | | 2023 |
| Multi-omics clustering based on interpretable and discriminative features for cancer subtyping T Shi, X Ye, T Sakurai 2023 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2023 | | 2023 |
| Adaptive learning embedding features to improve the predictive performance of SARS-CoV-2 phosphorylation sites S Jiao, X Ye, C Ao, T Sakurai, Q Zou, L Xu Bioinformatics 39 (11), btad627, 2023 | 1 | 2023 |
