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Marnix Medema
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Cited by
Year
Genome mining of metabolic gene clusters in the Rubiaceae family
SMC de Lemos, AR Paschoal, R Guyot, M Medema, DS Domingues
Computational and Structural Biotechnology Journal 23, 22-33, 2024
12024
Unleashing the potential of cell painting assays for compound activities and hazards prediction
F Odje, D Meijer, E Von Coburg, JJJ van der Hooft, S Dunst, MH Medema, ...
Frontiers in Toxicology 6, 1401036, 2024
2024
Phyllosphere microbiome assembly in wild green foxtail: designing synthetic communities for domesticated millet protection
X Zai, F Zhu, M Zhao, X Diao, F Zhang, F Dini-Andreote, C Melkonian, ...
2024
CineMol: a programmatically accessible direct-to-SVG 3D small molecule drawer
D Meijer, MH Medema, JJJ van der Hooft
Journal of Cheminformatics 16 (1), 58, 2024
12024
CineMol: a direct-to-SVG small molecule drawer
D Meijer, M Medema, J van der Hooft
2024
Discovery and Derivatization of Tridecaptin Antibiotics with Altered Host Specificity and Enhanced Bioactivity
NV Machushynets, K Al Ayed, BR Terlouw, C Du, NP Buijs, J Willemse, ...
ACS Chemical Biology 19 (5), 1106-1115, 2024
2024
The Minimum Information about a Tailoring Enzyme/Maturase data standard for capturing natural product biosynthesis
MM Zdouc, D Meijer, F Biermann, J Holme, A Korenskaia, A Lien, ...
2024
Harnessing regulatory networks in Actinobacteria for natural product discovery
HE Augustijn, AM Roseboom, MH Medema, GP van Wezel
Journal of Industrial Microbiology and Biotechnology, kuae011, 2024
12024
LogoMotif: a comprehensive database of transcription factor binding site profiles in Actinobacteria
HE Augustijn, D Karapliafis, KMM Joosten, S Rigali, GP van Wezel, ...
Journal of Molecular Biology, 168558, 2024
12024
Microbial Assimilatory Sulfate Reduction-Mediated H2S: An Overlooked Role in Crohn's Disease Development
W Luo, M Zhao, M Dwidar, L Xiang, Y Gao, X Wu, MH Medema, S Xu, X Li, ...
2024
Strategies for tailoring functional microbial synthetic communities
J Jing, P Garbeva, JM Raaijmakers, MH Medema
The ISME journal, wrae049, 2024
42024
bacLIFE: a user-friendly computational workflow for genome analysis and prediction of lifestyle-associated genes in bacteria
G Guerrero-Egido, A Pintado, KM Bretscher, LM Arias-Giraldo, ...
Nature Communications 15 (1), 2072, 2024
12024
Taxonomic and metabolic diversity of Actinomycetota isolated from faeces of a 28,000‐year‐old mammoth
DA van Bergeijk, HE Augustijn, SS Elsayed, J Willemse, VJ Carrión, C Du, ...
Environmental Microbiology 26 (2), e16589, 2024
4*2024
The antiSMASH database version 4: additional genomes and BGCs, new sequence-based searches and more
K Blin, S Shaw, MH Medema, T Weber
Nucleic acids research 52 (D1), D586-D589, 2024
142024
Prediction of gene cluster function based on transcriptional regulatory networks uncovers a novel locus required for desferrioxamine B biosynthesis
HE Augustijn, ZL Reitz, L Zhang, JA Boot, SS Elsayed, G Challis, ...
bioRxiv, 2024.06. 10.598258, 2024
2024
Taxonomic resolution of different 16S rRNA variable regions varies strongly across plant-associated bacteria
K Hrovat, BE Dutilh, MH Medema, C Melkonian
ISME communications 4 (1), ycae034, 2024
2024
Artificial intelligence for natural product drug discovery
MW Mullowney, KR Duncan, SS Elsayed, N Garg, JJJ van der Hooft, ...
Nature Reviews Drug Discovery 22 (11), 895-916, 2023
772023
gutSMASH predicts specialized primary metabolic pathways from the human gut microbiota
V Pascal Andreu, HE Augustijn, L Chen, A Zhernakova, J Fu, ...
Nature biotechnology 41 (10), 1416-1423, 2023
392023
A widely distributed gene cluster compensates for uricase loss in hominids
Y Liu, JB Jarman, YS Low, HE Augustijn, S Huang, H Chen, ME DeFeo, ...
Cell 186 (16), 3400-3413. e20, 2023
342023
antiSMASH 7.0: new and improved predictions for detection, regulation, chemical structures and visualisation
K Blin, S Shaw, HE Augustijn, ZL Reitz, F Biermann, M Alanjary, A Fetter, ...
Nucleic acids research 51 (W1), W46-W50, 2023
5262023
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