| Identifying immune signatures of common exposures through co-occurrence of T-cell receptors in tens of thousands of donors DH May, S Woodhouse, HJ Zahid, R Elyanow, K Doroschak, MT Noakes, ... bioRxiv, 2024.03. 26.583354, 2024 | 1 | 2024 |
| A Catalog of the Public T-cell Response to Cytomegalovirus DH May, S Woodhouse, B Howie, HS Robins bioRxiv, 2024.05. 08.593237, 2024 | | 2024 |
| Seq2MAIT: A Novel Deep Learning Framework for Identifying Mucosal Associated Invariant T (MAIT) Cells H ElAbd, R Byron, S Woodhouse, B Robinett, J Sulc, A Franke, M Pesesky, ... bioRxiv, 2024.03. 12.584395, 2024 | 1 | 2024 |
| AIRIVA: a deep generative model of adaptive immune repertoires MF Pradier, N Prasad, P Chapfuwa, S Ghalebikesabi, M Ilse, ... Machine Learning for Healthcare Conference, 588-611, 2023 | 5 | 2023 |
| Developmental trajectories of thalamic progenitors revealed by single-cell transcriptome profiling and Shh perturbation KW Govek, S Chen, P Sgourdou, Y Yao, S Woodhouse, T Chen, ... Cell reports 41 (10), 2022 | 8* | 2022 |
| Single-cell antigen-specific landscape of CAR T infusion product identifies determinants of CD19-positive relapse in patients with ALL Z Bai, S Woodhouse, Z Zhao, R Arya, K Govek, D Kim, S Lundh, A Baysoy, ... Science advances 8 (23), eabj2820, 2022 | 85 | 2022 |
| Mapping Rora expression in resting and activated CD4+ T cells L Haim-Vilmovsky, J Henriksson, JA Walker, Z Miao, E Natan, G Kar, ... PloS one 16 (5), e0251233, 2021 | 37* | 2021 |
| Single-cell transcriptomic analysis of mIHC images via antigen mapping KW Govek, EC Troisi, Z Miao, RG Aubin, S Woodhouse, PG Camara Science Advances 7 (10), eabc5464, 2021 | 38 | 2021 |
| Rora regulates activated T helper cells during inflammation E Charidemou, LH Vilmovsky, JA Walker, J Henriksson, Z Miao, E Natan, ... PLoS ONE, 2021 | | 2021 |
| Single-cell multiomics dissection of basal and antigen-specific activation states of CD19-targeted CAR T cells Z Bai, S Lundh, D Kim, S Woodhouse, DM Barrett, RM Myers, SA Grupp, ... Journal for ImmunoTherapy of Cancer 9 (5), 2021 | 44 | 2021 |
| Ex-vivo stimulation of chimeric antigen receptor T cell pre-infusion products predicts clinical response in pediatric B cell acute lymphoblastic leukemia. S Woodhouse, Z Bai, R Fan, PG Camara, JJ Melenhorst CANCER RESEARCH 80 (21), 2020 | | 2020 |
| Abstract PO-078: Single-cell transcriptomic analysis of highly-multiplexed IHC images via antigen mapping KW Govek, EC Troisi, Z Miao, S Woodhouse, PG Camara Cancer Research 80 (21_Supplement), PO-078-PO-078, 2020 | | 2020 |
| Abstract PO-015: Ex-vivo stimulation of chimeric antigen receptor T cell pre-infusion products predicts clinical response in pediatric B cell acute lymphoblastic leukemia S Woodhouse, Z Bai, R Fan, PG Camara, JJ Melenhorst Cancer Research 80 (21_Supplement), PO-015-PO-015, 2020 | | 2020 |
| Using state space exploration to determine how gene regulatory networks constrain mutation order in cancer evolution MA Clarke, S Woodhouse, N Piterman, BA Hall, J Fisher Automated reasoning for systems biology and medicine, 133-153, 2019 | 8 | 2019 |
| SCNS: a graphical tool for reconstructing executable regulatory networks from single-cell genomic data S Woodhouse, N Piterman, CM Wintersteiger, B Göttgens, J Fisher BMC systems biology 12, 1-7, 2018 | 85 | 2018 |
| Program synthesis meets deep learning for decoding regulatory networks J Fisher, S Woodhouse Current Opinion in Systems Biology 4, 64-70, 2017 | 6 | 2017 |
| Synthesising executable gene regulatory networks in haematopoiesis from single-cell gene expression data S Woodhouse University of Cambridge, 2017 | 3 | 2017 |
| BTR: training asynchronous Boolean models using single-cell expression data CY Lim, H Wang, S Woodhouse, N Piterman, L Wernisch, J Fisher, ... BMC bioinformatics 17, 1-18, 2016 | 98 | 2016 |
| Single-cell analysis of CD4+ T-cell differentiation reveals three major cell states and progressive acceleration of proliferation V Proserpio, A Piccolo, L Haim-Vilmovsky, G Kar, T Lönnberg, ... Genome biology 17, 1-15, 2016 | 69 | 2016 |
| Processing, visualising and reconstructing network models from single‐cell data S Woodhouse, V Moignard, B Göttgens, J Fisher Immunology and Cell Biology 94 (3), 256-265, 2016 | 18 | 2016 |
Jasmin FisherProfessor of Computational Biology, UCL Cancer InstituteVerified email at ucl.ac.uk