| An atlas of transcribed enhancers across helper T cell diversity for decoding human diseases A Oguchi, A Suzuki, S Komatsu, H Yoshitomi, S Bhagat, R Son, ... Science 385 (6704), eadd8394, 2024 | | 2024 |
| Fetal cord plasma herpesviruses and preeclampsia: an observational cohort study I Häkkinen, G Yazgeldi Gunaydin, L Pyöriä, S Kojima, N Parrish, ... Scientific Reports 14 (1), 14605, 2024 | | 2024 |
| POS0312 ENDOGENEOUS HUMAN HERPESVIRUS 6B INTEGRATED IN HUMAN GENOME SEQUENCE ASSOCIATES WITH AFFECTION AND SEVERITY OF SYSTEMIC LUPUS ERYTHEMATOSUS Y Okada, N Sasa, S Kojima, T Hasegawa, H Namkoong, T Hirota, ... Annals of the Rheumatic Diseases 83 (Suppl 1), 262-263, 2024 | | 2024 |
| Comprehensive identification of potentially active transposon-mobility genes in C. elegans genome Y Arata, P Jurica, N Parrish, Y Sako | | 2023 |
| Mobile element variation contributes to population-specific genome diversification, gene regulation and disease risk S Kojima, S Koyama, M Ka, Y Saito, EH Parrish, M Endo, S Takata, ... Nature genetics 55 (6), 939-951, 2023 | 15 | 2023 |
| Bridging multiple dimensions: roles of transposable elements in higher-order genome regulation J Sharif, H Koseki, NF Parrish Current Opinion in Genetics & Development 80, 102035, 2023 | 2 | 2023 |
| Prediction of the cell-type-specific transcription of non-coding RNAs from genome sequences via machine learning M Koido, CC Hon, S Koyama, H Kawaji, Y Murakawa, K Ishigaki, K Ito, ... Nature Biomedical Engineering 7 (6), 830-844, 2023 | 13 | 2023 |
| The regulation of persistent Borna disease virus infection by RNA silencing factors in human cells Y Kaneko, Y Naito, R Koide, NF Parrish, T Takahashi Biochemical and Biophysical Research Communications 658, 122-127, 2023 | | 2023 |
| Comprehensive identification of potentially functional genes for transposon mobility in the C. elegans genome Y Arata, P Jurica, NF Parrish, Y Sako bioRxiv, 2023.08. 08.552548, 2023 | 1 | 2023 |
| PiRNA: Methods and Protocols NF Parrish, YW Iwasaki Springer Nature, 2022 | | 2022 |
| A hominoid-specific endogenous retrovirus may have rewired the gene regulatory network shared between primordial germ cells and naïve pluripotent cells J Ito, Y Seita, S Kojima, NF Parrish, K Sasaki, K Sato PLoS Genetics 18 (5), e1009846, 2022 | 14 | 2022 |
| Mobile elements in human population-specific genome and phenotype divergence S Kojima, S Koyama, M Ka, Y Saito, EH Parrish, M Endo, S Takata, ... bioRxiv, 2022.03. 25.485726, 2022 | 4 | 2022 |
| Mammalian antiviral systems directed by small RNA T Takahashi, SM Heaton, NF Parrish PLoS pathogens 17 (12), e1010091, 2021 | 28 | 2021 |
| Comprehensive discovery of CRISPR-targeted terminally redundant sequences in the human gut metagenome: Viruses, plasmids, and more R Sugimoto, L Nishimura, PT Nguyen, J Ito, NF Parrish, H Mori, ... PLoS Computational Biology 17 (10), e1009428, 2021 | 12 | 2021 |
| Virus-derived variation in diverse human genomes S Kojima, AJ Kamada, NF Parrish PLoS Genetics 17 (4), e1009324, 2021 | 4 | 2021 |
| Endogenous retrovirus rewired the gene regulatory network shared between primordial germ cells and naïve pluripotent cells in hominoids J Ito, Y Seita, S Kojima, NF Parrish, K Sasaki, K Sato bioRxiv, 2021.03. 09.434541, 2021 | 1 | 2021 |
| Virus-like insertions with sequence signatures similar to those of endogenous nonretroviral RNA viruses in the human genome S Kojima, K Yoshikawa, J Ito, S Nakagawa, NF Parrish, M Horie, ... Proceedings of the National Academy of Sciences 118 (5), e2010758118, 2021 | 15 | 2021 |
| Chromosomally-integrated human herpesvirus 6 and autoimmune connective tissue diseases. S Kojima, NF Parrish, C Terao | | 2021 |
| Evolutionary history of endogenous human herpesvirus 6 reflects human migration out of Africa A Aswad, G Aimola, D Wight, P Roychoudhury, C Zimmermann, J Hill, ... Molecular Biology and Evolution 38 (1), 96-107, 2021 | 31 | 2021 |
| Endogenous retroviruses drive species-specific germline transcriptomes in mammals A Sakashita, S Maezawa, K Takahashi, KG Alavattam, M Yukawa, YC Hu, ... Nature structural & molecular biology 27 (10), 967-977, 2020 | 68 | 2020 |