| Multiomic atlas with functional stratification and developmental dynamics of zebrafish cis-regulatory elements D Baranasic, M Hörtenhuber, PJ Balwierz, T Zehnder, AK Mukarram, ... Nature genetics 54 (7), 1037-1050, 2022 | 32 | 2022 |
| Identification of downstream effectors of retinoic acid specifying the zebrafish pancreas by integrative genomics AR López-Pérez, PJ Balwierz, B Lenhard, F Muller, FC Wardle, I Manfroid, ... Scientific Reports 11 (1), 22717, 2021 | 8 | 2021 |
| Identification of downstream effectors of retinoic acid specifying the zebrafish pancreas by integrative genomics AR López-Pérez, PJ Balwierz, B Lenhard, F Muller, FC Wardle, I Manfroid, ... Scientific Reports 11 (1), 22717, 2021 | 8 | 2021 |
| Integrated annotation and analysis of genomic features reveal new types of functional elements and large-scale epigenetic phenomena in the developing zebrafish D Baranasic, M Hörtenhuber, P Balwierz, T Zehnder, AK Mukarram, ... bioRxiv, 2021.08. 09.454869, 2021 | 6 | 2021 |
| Germ cell differentiation requires Tdrd7-dependent chromatin and transcriptome reprogramming marked by germ plasm relocalization FM D’Orazio, PJ Balwierz, AJ González, Y Guo, B Hernández-Rodríguez, ... Developmental cell 56 (5), 641-656. e5, 2021 | 26 | 2021 |
| Germ plasm localisation dynamics mark distinct phases of transcriptional and post-transcriptional regulation control in primordial germ cells FM D’Orazio, P Balwierz, Y Guo, B Hernández-Rodríguez, A Jasiulewicz, ... BioRxiv, 2020.01. 12.903336, 2020 | 1 | 2020 |
| Dual-initiation promoters with intertwined canonical and TCT/TOP transcription start sites diversify transcript processing C Nepal, Y Hadzhiev, P Balwierz, E Tarifeño-Saldivia, R Cardenas, ... Nature communications 11 (1), 168, 2020 | 44 | 2020 |
| Amphioxus functional genomics and the origins of vertebrate gene regulation F Marlétaz, PN Firbas, I Maeso, JJ Tena, O Bogdanovic, M Perry, ... Nature 564 (7734), 64, 2018 | 234 | 2018 |
| ISMARA: Completely automated inference of gene regulatory networks from high-throughput data M Pachkov, PJ Balwierz, P Arnold, AJ Gruber, M Zavolan, ... PeerJ Preprints 5, e3328v1, 2017 | 2 | 2017 |
| Embryonic stem cell-specific microRNAs contribute to pluripotency by inhibiting regulators of multiple differentiation pathways AJ Gruber, WA Grandy, PJ Balwierz, YA Dimitrova, M Pachkov, C Ciaudo, ... Nucleic acids research 42 (14), 9313-9326, 2014 | 49 | 2014 |
| The enhancer and promoter landscape of human regulatory and conventional T-cell subpopulations C Schmidl, L Hansmann, T Lassmann, PJ Balwierz, H Kawaji, M Itoh, ... Blood 123 (17), e68-e78, 2014 | 90 | 2014 |
| Transcription and enhancer profiling in human monocyte subsets C Schmidl, K Renner, K Peter, R Eder, T Lassmann, PJ Balwierz, M Itoh, ... Blood 123 (17), e90-e99, 2014 | 189 | 2014 |
| Differential roles of epigenetic changes and Foxp3 expression in regulatory T cell-specific transcriptional regulation H Morikawa, N Ohkura, A Vandenbon, M Itoh, S Nagao-Sato, H Kawaji, ... Proceedings of the National Academy of Sciences 111 (14), 5289-5294, 2014 | 143 | 2014 |
| An epigenetic profile of early T‐cell development from multipotent progenitors to committed T‐cell descendants MA Vigano, R Ivanek, P Balwierz, P Berninger, E van Nimwegen, ... European journal of immunology 44 (4), 1181-1193, 2014 | 27 | 2014 |
| A promoter-level mammalian expression atlas ARR Forrest, H Kawaji, M Rehli, JK Baillie, MJL De Hoon, V Haberle, ... Nature 507 (7493), 462-470, 2014 | 1729* | 2014 |
| ISMARA: automated modeling of genomic signals as a democracy of regulatory motifs PJ Balwierz, M Pachkov, P Arnold, AJ Gruber, M Zavolan, ... Genome research, 2014 | 309 | 2014 |
| Sox4 Is a Master Regulator of Epithelial-Mesenchymal Transition by Controlling Ezh2 Expression and Epigenetic Reprogramming N Tiwari, VK Tiwari, L Waldmeier, PJ Balwierz, P Arnold, M Pachkov, ... Cancer cell 23 (6), 768-783, 2013 | 494 | 2013 |
| Parity induces differentiation and reduces Wnt/Notch signaling ratio and proliferation potential of basal stem/progenitor cells isolated from mouse mammary epithelium F Meier-Abt, E Milani, T Roloff, H Brinkhaus, S Duss, DS Meyer, I Klebba, ... Breast Cancer Research 15 (2), R36, 2013 | 125 | 2013 |
| PLONG-TERM EFFECTS OF EARLY PREGNANCY ON THE GENE EXPRESSION AND PROPERTIES OF MAMMARY EPITHELIAL CELL SUBPOPULATIONS IN MICE F Meier-Abt, E Milani, T Roloff, H Brinkhaus, S Duss, D Meyer, I Klebba, ... Annals of oncology 24, 2013 | 1 | 2013 |
| SwissRegulon, a database of genome-wide annotations of regulatory sites: recent updates M Pachkov, PJ Balwierz, P Arnold, E Ozonov, E van Nimwegen Nucleic Acids Research 41 (D1), D214-D220, 2013 | 151 | 2013 |
Erik van NimwegenProfessor of computational systems biology, Biozentrum, University of BaselVerified email at unibas.ch
