| The ADAR1 editome reveals drivers of editing-specificity for ADAR1-isoforms R Kleinova, V Rajendra, AF Leuchtenberger, C Lo Giudice, C Vesely, ... Nucleic acids research 51 (9), 4191-4207, 2023 | 14 | 2023 |
| A toolbox for class I HDACs reveals isoform specific roles in gene regulation and protein acetylation L Hess, V Moos, AA Lauber, W Reiter, M Schuster, N Hartl, D Lackner, ... PLoS genetics 18 (8), e1010376, 2022 | 19 | 2022 |
| RNAxplorer: harnessing the power of guiding potentials to sample RNA landscapes G Entzian, IL Hofacker, Y Ponty, R Lorenz, A Tanzer Bioinformatics 37 (15), 2126-2133, 2021 | 4 | 2021 |
| Non-Redundant Sampling and Statistical Estimators for RNA Structural Properties at the Thermodynamic Equilibrium C Rovetta, J Michálik, R Lorenz, A Tanzer, Y Ponty | 3 | 2019 |
| Control of cognate sense mRNA translation by cis-natural antisense RNAs J Deforges, RS Reis, P Jacquet, S Sheppard, VP Gadekar, G Hart-Smith, ... Plant physiology 180 (1), 305-322, 2019 | 52 | 2019 |
| RNA modifications in structure prediction–Status quo and future challenges A Tanzer, IL Hofacker, R Lorenz Methods 156, 32-39, 2019 | 40 | 2019 |
| RNA structure elements conserved between mouse and 59 other vertebrates BC Thiel, R Ochsenreiter, VP Gadekar, A Tanzer, IL Hofacker Genes 9 (8), 392, 2018 | 21 | 2018 |
| Differential transcriptional responses to Ebola and Marburg virus infection in bat and human cells (vol 6, 34589, 2016) M Hoelzer, V Kraehling, F Amman, E Barth, SH Bernhart, VAO Carmelo, ... SCIENTIFIC REPORTS 7, 2017 | | 2017 |
| Corrigendum: Differential transcriptional responses to Ebola and Marburg virus infection in bat and human cells M Hölzer, V Krähling, F Amman, E Barth, SH Bernhart, VAO Carmelo, ... Scientific Reports 7, 2017 | 2 | 2017 |
| Transcriptome-wide effects of inverted SINEs on gene expression and their impact on RNA polymerase II activity M Tajaddod, A Tanzer, K Licht, MT Wolfinger, S Badelt, F Huber, O Pusch, ... Genome Biology 17, 1-16, 2016 | 20 | 2016 |
| Differential transcriptional responses to Ebola and Marburg virus infection in bat and human cells M Hölzer, V Krähling, F Amman, E Barth, SH Bernhart, VAO Carmelo, ... Scientific reports 6 (1), 34589, 2016 | 65 | 2016 |
| Extension of human lncRNA transcripts by RACE coupled with long-read high-throughput sequencing (RACE-Seq) J Lagarde, B Uszczynska-Ratajczak, J Santoyo-Lopez, JM Gonzalez, ... Nature communications 7 (1), 12339, 2016 | 77 | 2016 |
| Predicting RNA secondary structures from sequence and probing data R Lorenz, MT Wolfinger, A Tanzer, IL Hofacker Methods 103, 86-98, 2016 | 122 | 2016 |
| Evolution of regulatory RNA elements in Zika viruses and other Flaviviridae A Tanzer, RW Ochsenreiter, M Wolfinger, I Hofacker Virus Genomics and Evolution, 2016 | | 2016 |
| Tristetraprolin binding site atlas in the macrophage transcriptome reveals a switch for inflammation resolution V Sedlyarov, J Fallmann, F Ebner, J Huemer, L Sneezum, M Ivin, ... Molecular systems biology 12 (5), 868, 2016 | 84 | 2016 |
| AREsite2: an enhanced database for the comprehensive investigation of AU/GU/U-rich elements J Fallmann, V Sedlyarov, A Tanzer, P Kovarik, IL Hofacker Nucleic acids research 44 (D1), D90-D95, 2016 | 87 | 2016 |
| Genome-wide association study in asian populations identifies variants in ETS1 and WDFY4 associated with systemic lupus erythematosus V Kumar, HJ Westra, J Karjalainen, DV Zhernakova, T Esko, B Hrdlickova, ... Nature, 2016 | | 2016 |
| Enhanced transcriptome maps from multiple mouse tissues reveal evolutionary constraint in gene expression DD Pervouchine, S Djebali, A Breschi, CA Davis, PP Barja, A Dobin, ... Nature communications 6 (1), 5903, 2015 | 89 | 2015 |
| A comparative encyclopedia of DNA elements in the mouse genome F Yue, Y Cheng, A Breschi, J Vierstra, W Wu, T Ryba, R Sandstrom, Z Ma, ... Nature 515 (7527), 355-364, 2014 | 1930 | 2014 |
| Enhanced transcriptome maps from multiple mouse tissues reveal evolutionary constraint in gene expression for thousands of genes DD Pervouchine, S Djebali, A Breschi, CA Davis, P Prieto Barja, A Dobin, ... BioRxiv, 010884, 2014 | 1 | 2014 |