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John Lovell
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Genome resources for three modern cotton lines guide future breeding efforts
A Sreedasyam, JT Lovell, S Mamidi, S Khanal, JW Jenkins, C Plott, ...
Nature Plants, 1-13, 2024
2024
Assembly, comparative analysis, and utilization of a single haplotype reference genome for soybean
MJC Espina, JT Lovell, J Jenkins, S Shu, A Sreedasyam, BD Jordan, ...
bioRxiv, 2024.04. 26.591401, 2024
2024
The complex polyploid genome architecture of sugarcane
AL Healey, O Garsmeur, JT Lovell, S Shengquiang, A Sreedasyam, ...
Nature 628 (8009), 804-810, 2024
112024
Exploring and Exploiting Genomic Regions of Interest in Complex Polyploid Crops
J Lovell
Plant and Animal Genome Conference/PAG 31 (January 12-17, 2024), 2024
2024
Local adaptation of both plant and pathogen: an arms-race compromise in switchgrass rust
A VanWallendael, C Wijewardana, J Bonnette, L Vormwald, FB Fritschi, ...
bioRxiv, 2024.06. 11.595169, 2024
2024
ZW sex chromosome structure in Amborella trichopoda
SB Carey, L Akozbek, JT Lovell, JW Jenkins, AL Healey, S Shu, ...
bioRxiv, 2024.05. 10.593579, 2024
2024
The reference genome and abiotic stress responses of the model perennial grass Brachypodium sylvaticum
L Lei, SP Gordon, L Liu, N Sade, JT Lovell, MDM Rubio Wilhelmi, ...
G3: Genes, Genomes, Genetics 14 (1), jkad245, 2024
22024
JGI Plant Gene Atlas: an updateable transcriptome resource to improve functional gene descriptions across the plant kingdom
A Sreedasyam, C Plott, MS Hossain, JT Lovell, J Grimwood, JW Jenkins, ...
Nucleic acids research 51 (16), 8383-8401, 2023
192023
Genome analyses reveal population structure and a purple stigma color gene candidate in finger millet
KM Devos, P Qi, BA Bahri, DM Gimode, K Jenike, SJ Manthi, D Lule, ...
Nature communications 14 (1), 3694, 2023
172023
Genomic prediction of switchgrass winter survivorship across diverse lowland populations
NW Tilhou, HP Poudel, J Lovell, S Mamidi, J Schmutz, C Daum, M Zane, ...
G3: Genes, Genomes, Genetics 13 (3), jkad014, 2023
32023
Newly identified sex chromosomes in the Sphagnum (peat moss) genome alter carbon sequestration and ecosystem dynamics
AL Healey, B Piatkowski, JT Lovell, A Sreedasyam, SB Carey, S Mamidi, ...
Nature Plants 9 (2), 238-254, 2023
282023
Multiple origins, one evolutionary trajectory: gradual evolution characterizes distinct lineages of allotetraploid Brachypodium
VT Scarlett, JT Lovell, M Shao, J Phillips, S Shu, J Lusinska, ...
Genetics 223 (2), iyac146, 2023
92023
Seed size, endosperm and germination variation in sexual and apomictic Boechera
D Paczesniak, M Pellino, R Goertzen, D Guenter, S Jahnke, A Fischbach, ...
Frontiers in Plant Science 13, 991531, 2022
52022
JGI Plant Gene Atlas: an updateable transcriptome resource to improve structural annotations and functional gene descriptions across the plant kingdom
A Sreedasyam, C Plott, MS Hossain, JT Lovell, J Grimwood, JW Jenkins, ...
BioRxiv, 2022.09. 30.510380, 2022
72022
A pleiotropic flowering time QTL exhibits gene-by-environment interaction for fitness in a perennial grass
X Weng, T Haque, L Zhang, S Razzaque, JT Lovell, JD Palacio-Mejía, ...
Molecular Biology and Evolution 39 (10), msac203, 2022
32022
GENESPACE tracks regions of interest and gene copy number variation across multiple genomes
JT Lovell, A Sreedasyam, ME Schranz, M Wilson, JW Carlson, A Harkess, ...
elife 11, e78526, 2022
942022
Dynamic genome evolution in a model fern
DB Marchant, G Chen, S Cai, F Chen, P Schafran, J Jenkins, S Shu, ...
Nature Plants 8 (9), 1038-1051, 2022
802022
Host genotype controls ecological change in the leaf fungal microbiome
A VanWallendael, GMN Benucci, PB da Costa, L Fraser, A Sreedasyam, ...
PLoS Biology 20 (8), e3001681, 2022
182022
The road to accurate and complete human genomes
JT Lovell, J Grimwood
NATURE 606 (7914), 468-469, 2022
2022
The first complete human genome
JT Lovell, J Grimwood
Nature 606 (7914), 468-469, 2022
32022
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Articles 1–20