| MIFA: Metadata, Incentives, Formats, and Accessibility guidelines to improve the reuse of AI datasets for bioimage analysis T Zulueta-Coarasa, F Jug, A Mathur, J Moore, A Muñoz-Barrutia, L Anita, ... arXiv preprint arXiv:2311.10443, 2023 | | 2023 |
| Current Progress and Challenges in Large-Scale 3D Mitochondria Instance Segmentation D Franco-Barranco, Z Lin, WD Jang, X Wang, Q Shen, W Yin, Y Fan, M Li, ... IEEE transactions on medical imaging, 2023 | 1 | 2023 |
| Online citizen science with the Zooniverse for analysis of biological volumetric data P Smith, ONF King, A Pennington, W Tun, M Basham, ML Jones, ... Histochemistry and Cell Biology 160 (3), 253-276, 2023 | 3 | 2023 |
| Bridging imaging users to imaging analysis–A community survey S Sivagurunathan, S Marcotti, CJ Nelson, ML Jones, DJ Barry, TJA Slater, ... Journal of Microscopy, 2023 | 5 | 2023 |
| CLEM-Reg: An automated point cloud based registration algorithm for correlative light and volume electron microscopy D Krentzel, M Elphick, MC Domart, CJ Peddie, RF Laine, R Henriques, ... BioRxiv, 2023.05. 11.540445, 2023 | 5 | 2023 |
| Crosshair, semi-automated targeting for electron microscopy with a motorised ultramicrotome K Meechan, W Guan, A Riedinger, V Stankova, A Yoshimura, R Pipitone, ... Elife 11, e80899, 2022 | 7 | 2022 |
| Correlative Light and Electron Microscopy (CLEM): Bringing Together the Best of Both Worlds to Study Neuronal Autophagy J Kriel, D Lumkwana, LM Joubert, ML Jones, CJ Peddie, L Collinson, ... Imaging and Quantifying Neuronal Autophagy, 135-147, 2022 | 2 | 2022 |
| Deep learning for automatic segmentation of the nuclear envelope in electron microscopy data, trained with volunteer segmentations H Spiers, H Songhurst, L Nightingale, J De Folter, ... Traffic 22 (7), 240-253, 2021 | 36 | 2021 |
| Volumetric semantic instance segmentation of the plasma membrane of hela cells C Karabağ, ML Jones, CC Reyes-Aldasoro Journal of Imaging 7 (6), 93, 2021 | 7 | 2021 |
| Automatic instance segmentation of mitochondria in electron microscopy data L Nightingale, J de Folter, H Spiers, A Strange, LM Collinson, ML Jones BioRxiv, 2021.05. 24.444785, 2021 | 9 | 2021 |
| Emerging technologies and outlook A Walter, A Munoz-Baruttia, M Jones, JG Mannheim, L Collinson, ... Imaging Modalities for Biological and Preclinical Research: A Compendium …, 2021 | 2 | 2021 |
| Democratising deep learning for microscopy with ZeroCostDL4Mic L von Chamier, RF Laine, J Jukkala, C Spahn, D Krentzel, E Nehme, ... Nature communications 12 (1), 2276, 2021 | 379 | 2021 |
| Semantic segmentation of HeLa cells: An objective comparison between one traditional algorithm and four deep-learning architectures C Karabağ, ML Jones, CJ Peddie, AE Weston, LM Collinson, ... Plos one 15 (10), e0230605, 2020 | 18 | 2020 |
| Citizen science, cells and CNNs–deep learning for automatic segmentation of the nuclear envelope in electron microscopy data, trained with volunteer segmentations H Spiers, H Songhurst, L Nightingale, J de Folter, R Hutchings, CJ Peddie, ... bioRxiv, 2020.07. 28.223024, 2020 | 12 | 2020 |
| EDAM-bioimaging: The ontology of bioimage informatics operations, topics, data, and formats (update 2020) M Kalaš, L Plantard, N Sladoje, J Lindblad, MA Kirschmann, M Jones, ... ELIXIR All Hands 2020, 2020 | 3 | 2020 |
| Geometric differences between nuclear envelopes of Wild-type and Chlamydia trachomatis-infected HeLa cells C Karabağ, ML Jones, CJ Peddie, AE Weston, LM Collinson, ... bioRxiv, 2020.04. 02.021733, 2020 | | 2020 |
| ZeroCostDL4Mic: an open platform to use Deep-Learning in Microscopy L Chamier, RF Laine, J Jukkala, C Spahn, D Krentzel, E Nehme, ... BioRxiv, 2020.03. 20.000133, 2020 | 55 | 2020 |
| Segmentation and modelling of the nuclear envelope of hela cells imaged with serial block face scanning electron microscopy C Karabağ, ML Jones, CJ Peddie, AE Weston, LM Collinson, ... Journal of Imaging 5 (9), 75, 2019 | 20 | 2019 |
| Harnessing the power of the crowd for bioimage analysis M Jones, H Songhurst, C Peddie, A Weston, H Spiers, C Lintott, ... Microscopy and Microanalysis 25 (S2), 1372-1373, 2019 | 2 | 2019 |
| Segmentation And Modelling of Helanuclear Envelope C Karabağ, ML Jones, CJ Peddie, AE Westor, LM Collinson, ... 2019 IEEE 16th International Symposium on Biomedical Imaging (ISBI 2019 …, 2019 | 1 | 2019 |
Lucy M Collinson and Lucy CollinsonFrancis Crick InstituteVerified email at crick.ac.uk
