From telomere to telomere: The transcriptional and epigenetic state of human repeat elements SJ Hoyt, JM Storer, GA Hartley, PGS Grady, A Gershman, LG de Lima, ... Science 376 (6588), eabk3112, 2022 | 208 | 2022 |
Antisense oligonucleotides targeting UBE3A-ATS restore expression of UBE3A by relieving transcriptional interference ND Germain, D Gorka, R Drennan, P Jafar-nejad, A Whipple, L Core, ... bioRxiv, 2021.07. 09.451826, 2021 | 5 | 2021 |
Multiple modes of regulation control dynamic transcription patterns during the mitosis-G1 transition LA Wojenski, LM Wainman, G Villafano, C Kuhlberg, P Nanda, L Core bioRxiv, 2021.06. 22.449286, 2021 | | 2021 |
H3K27ac bookmarking promotes rapid post-mitotic activation of the pluripotent stem cell program without impacting 3D chromatin reorganization B Pelham-Webb, A Polyzos, L Wojenski, A Kloetgen, J Li, ... Molecular cell 81 (8), 1732-1748. e8, 2021 | 67 | 2021 |
Mitotic retention of H3K27 acetylation promotes rapid topological and transcriptional resetting of stem cell-related genes and enhancers upon G1 entry B Pelham-Webb, A Polyzos, L Wojenski, A Kloetgen, J Li, ... bioRxiv, 2020.06. 02.130104, 2020 | 2 | 2020 |
A rapid, sensitive, scalable method for Precision Run-On sequencing (PRO-seq) J Judd, LA Wojenski, LM Wainman, ND Tippens, EJ Rice, A Dziubek, ... Biorxiv, 2020.05. 18.102277, 2020 | 39 | 2020 |
An improved auxin-inducible degron system preserves native protein levels and enables rapid and specific protein depletion KM Sathyan, BD McKenna, WD Anderson, FM Duarte, L Core, MJ Guertin Genes & development 33 (19-20), 1441-1455, 2019 | 102 | 2019 |
Promoter-proximal pausing of RNA polymerase II: a nexus of gene regulation L Core, K Adelman Genes & development 33 (15-16), 960-982, 2019 | 456 | 2019 |
A bipartite boundary element restricts UBE3A imprinting to mature neurons JS Hsiao, ND Germain, A Wilderman, C Stoddard, LA Wojenski, ... Proceedings of the National Academy of Sciences 116 (6), 2181-2186, 2019 | 59 | 2019 |
An AR-ERG transcriptional signature defined by long-range chromatin interactomes in prostate cancer cells Z Zhang, KR Chng, S Lingadahalli, Z Chen, MH Liu, HH Do, S Cai, ... Genome research 29 (2), 223-235, 2019 | 47 | 2019 |
An AR-ERG transcriptional signature defined by long-range chromatin interactomes in prostate cancer cells MH Liu, HH Do, S Cai, N Rinaldi, HM Poh, G Li, YY Sung, CL Heng, ... | | 2019 |
The RNA exosome contributes to gene expression regulation during stem cell differentiation M Lloret-Llinares, E Karadoulama, Y Chen, LA Wojenski, GJ Villafano, ... Nucleic Acids Research 46 (21), 11502-11513, 2018 | 47 | 2018 |
Chromatin run-on and sequencing maps the transcriptional regulatory landscape of glioblastoma multiforme T Chu, EJ Rice, GT Booth, HH Salamanca, Z Wang, LJ Core, SL Longo, ... Nature genetics 50 (11), 1553-1564, 2018 | 116 | 2018 |
BIOLOGICAL SCIENCES: Genetics JS Hsiao, ND Germain, A Wilderman, C Stoddard, LA Wojenski, ... bioRxiv, 404061, 2018 | | 2018 |
Unique nascent RNA sequences that distinguish normal brain and malignant gliomas LS Chin, T Chu, E Rice, G Booth, H Salamanca, Z Wang, L Core, S Longo, ... JOURNAL OF NEUROSURGERY 128 (4), 59-59, 2018 | | 2018 |
Differential enhancer transcription associated with risk allele genotype in CLL B Tesar, L Werner, N Pochet, S Fernandes, MR Improgo, J Klitgaard, ... LEUKEMIA & LYMPHOMA 58, 30-31, 2017 | | 2017 |
Chromatin run-on reveals the transcriptional etiology of glioblastoma multiforme T Chu, EJ Rice, GT Booth, HH Salamanca, Z Wang, LJ Core, SL Longo, ... | | 2017 |
Chromatin run-on reveals nascent RNAs that differentiate normal and malignant brain tissue T Chu, EJ Rice, GT Booth, HH Salamanca, Z Wang, LJ Core, SL Longo, ... bioRxiv, 185991, 2017 | 6 | 2017 |
Base-pair-resolution genome-wide mapping of active RNA polymerases using precision nuclear run-on (PRO-seq) DB Mahat, H Kwak, GT Booth, IH Jonkers, CG Danko, RK Patel, ... Nature protocols 11 (8), 1455-1476, 2016 | 458 | 2016 |
Transcription factors GAF and HSF act at distinct regulatory steps to modulate stress-induced gene activation FM Duarte, NJ Fuda, DB Mahat, LJ Core, MJ Guertin, JT Lis Genes & development 30 (15), 1731-1746, 2016 | 142 | 2016 |