BISCUIT: an efficient, standards-compliant tool suite for simultaneous genetic and epigenetic inference in bulk and single-cell studies W Zhou, BK Johnson, J Morrison, I Beddows, J Eapen, E Katsman, ... Nucleic Acids Research 52 (6), e32-e32, 2024 | 2 | 2024 |
Ultrasensitive amplification-free quantification of a methyl CpG-rich cancer biomarker by single-molecule kinetic fingerprinting L Dai, A Johnson-Buck, PW Laird, M Tewari, NG Walter bioRxiv, 2024 | | 2024 |
Leveraging compact feature sets for TCGA-based molecular subtype classification on new samples K Ellrott, CK Wong, C Yau, MA Castro, J Lee, B Karlberg, JK Grewal, ... Cancer Research 84 (6_Supplement), 6548-6548, 2024 | | 2024 |
Abstract B033: Mapping subclonal epigenetic evolution in colorectal cancer by spatial analysis of DNA hypermethylation NJ Spix, H Milliron, M Kalkat, E Eugster, DW Chesla, D Sokol, E Jung, ... Cancer Research 84 (3_Supplement_2), B033-B033, 2024 | | 2024 |
Abstract IA023: Spatial reconstruction and temporal inference of DNA methylation alterations in primary human colorectal cancer PW Laird, NJ Spix, H Milliron, M Kalkat, E Eugster, D Sokol, E Jung, ... Cancer Research 84 (3_Supplement_2), IA023-IA023, 2024 | | 2024 |
Epigenomic profiling of active regulatory elements by enrichment of unmodified CpG dinucleotides L Tosti, C Mould, I Gatehouse, A Camargo, A Smith, K Ubych, PW Laird, ... bioRxiv, 2024.02. 16.575381, 2024 | | 2024 |
Inferring tumour purity and stromal and immune cell admixture from expression data. Nat Commun. 2013; 4: 2612 K Yoshihara, M Shahmoradgoli, E Martínez, R Vegesna, H Kim, ... | 329 | 2024 |
In vivo analysis of Pim-1 deficiency (vol 21, pg 4750, 1993) PW Laird NUCLEIC ACIDS RESEARCH 51 (18), 10107-10107, 2023 | | 2023 |
Comprehensive evaluation of the Infinium human MethylationEPIC v2 BeadChip D Kaur, SM Lee, D Goldberg, NJ Spix, T Hinoue, HT Li, VB Dwaraka, ... Epigenetics communications 3 (1), 6, 2023 | 12 | 2023 |
Integrated DNA methylation/RNA profiling in middle temporal gyrus of Alzheimer’s disease IS Piras, D Brokaw, Y Kong, DJ Weisenberger, J Krate, E Delvaux, ... Cellular and Molecular Neurobiology 43 (5), 2289-2307, 2023 | 5 | 2023 |
DAB2IP is a bifunctional tumor suppressor that regulates wild-type RAS and inflammatory cascades in KRAS mutant colon cancer AL Miller, N Perurena, A Gardner, T Hinoue, P Loi, PW Laird, K Cichowski Cancer Research 83 (11), 1800-1814, 2023 | 4 | 2023 |
Author Correction: Comprehensive analysis of chromothripsis in 2,658 human cancers using whole-genome sequencing I Cortés-Ciriano, JJK Lee, R Xi, D Jain, YL Jung, L Yang, D Gordenin, ... nature genetics 55 (6), 1076-1076, 2023 | 2 | 2023 |
Evaluating The Infinium Human MethylationEPIC v2 BeadChip D Kaur, S Lee, D Goldberg, NJ Spix, T Hinoue, HT Li, VB Dwaraka, ... | 1 | 2023 |
Author Correction: The evolutionary history of 2,658 cancers M Gerstung, C Jolly, I Leshchiner, SC Dentro, S Gonzalez, D Rosebrock, ... Nature 614 (7948), E42-E42, 2023 | 1 | 2023 |
Author Correction: Pan-cancer analysis of whole genomes Nature 614 (7948), E39-E39, 2023 | 1 | 2023 |
Author Correction: Pan-cancer analysis of whole genomes (Nature,(2020), 578, 7793,(82-93), 10.1038/s41586-020-1969-6) LA Aaltonen, F Abascal, A Abeshouse, H Aburatani, DJ Adams, ... Nature 614 (7948), E39, 2023 | | 2023 |
Multiomics in primary and metastatic breast tumors from the AURORA US network finds microenvironment and epigenetic drivers of metastasis S Garcia-Recio, T Hinoue, GL Wheeler, BJ Kelly, AC Garrido-Castro, ... Nature Cancer 4 (1), 128-147, 2023 | 49 | 2023 |
Cell division drives DNA methylation loss in late-replicating domains in primary human cells JL Endicott, PA Nolte, H Shen, PW Laird Nature Communications 13 (1), 6659, 2022 | 28 | 2022 |
High-resolution profiling of lung adenocarcinoma identifies expression subtypes with specific biomarkers and clinically relevant vulnerabilities W Roh, Y Geffen, H Cha, M Miller, S Anand, J Kim, DI Heiman, JF Gainor, ... Cancer research 82 (21), 3917-3931, 2022 | 13 | 2022 |
Analysis of germline-driven ancestry-associated gene expression in cancers N Chambwe, RW Sayaman, D Hu, S Huntsman, J Carrot-Zhang, ... STAR protocols 3 (3), 101586, 2022 | 1 | 2022 |