| Dynamic Multiplexed Control and Modeling of Optogenetic Systems Using the High-Throughput Optogenetic Platform, Lustro ZP Harmer, JC Thompson, DL Cole, OS Venturelli, VM Zavala, ... ACS Synthetic Biology 13 (5), 1424-1433, 2024 | | 2024 |
| Elucidating human gut microbiota interactions that robustly inhibit diverse Clostridioides difficile strains across different nutrient landscapes JE Sulaiman, J Thompson, Y Qian, EI Vivas, C Diener, SM Gibbons, ... bioRxiv, 2024 | | 2024 |
| Deciphering multi-scale interaction networks driving microbial community dynamics and functions O Venturelli Bulletin of the American Physical Society, 2024 | | 2024 |
| Massively parallel single-cell sequencing of diverse microbial populations F Lan, J Saba, TD Ross, Z Zhou, K Krauska, K Anantharaman, R Landick, ... Nature methods 21 (2), 228-235, 2024 | 10* | 2024 |
| Cell-based dna sensors and methods of using same O Venturelli, YY Cheng, C Zhengyi US Patent App. 18/067,194, 2024 | | 2024 |
| Human gut microbiota interactions shape the long-term growth dynamics and evolutionary adaptations of Clostridioides difficile JE Sulaiman, J Thompson, PLK Cheung, Y Qian, J Mill, I James, E Vivas, ... bioRxiv, 2024.07. 15.603560, 2024 | | 2024 |
| Engineered lysins to modulate human gut microbiome communities JRD Rodriguez, W Lu, J Papadopoulos, OS Venturelli, PA Romero bioRxiv, 2024.05. 14.594189, 2024 | | 2024 |
| Control points for design of taxonomic composition in synthetic human gut communities BM Connors, J Thompson, S Ertmer, RL Clark, BF Pfleger, OS Venturelli Cell Systems 14 (12), 1044-1058. e13, 2023 | 12* | 2023 |
| The Arginine Dihydrolase Pathway Shapes Human Gut Community Assembly and Functions Y Liu, YY Cheng, Z Zhou, E Vivas, K Anantharaman, O Venturelli 2023 AIChE Annual Meeting, 2023 | | 2023 |
| High-Throughput Single-Cell Sequencing of B. Fragilis Populations in the Mouse Gut C Stark, O Venturelli, F Lan 2023 AIChE Annual Meeting, 2023 | | 2023 |
| Integrating a tailored recurrent neural network with Bayesian experimental design to optimize microbial community functions JC Thompson, VM Zavala, OS Venturelli PLOS Computational Biology 19 (9), e1011436, 2023 | 10 | 2023 |
| Emerging Mathematical Challenges in Synthetic Biological Network Design E Yeung, A Gyorgy, M Khammash, O Venturelli | | 2023 |
| Single-cell analysis of multiple invertible promoters reveals differential inversion rates as a strong determinant of bacterial population heterogeneity F Lan, J Saba, Y Qian, T Ross, R Landick, OS Venturelli Science Advances 9 (31), eadg5476, 2023 | 10 | 2023 |
| Gut microbiota interspecies interactions shape the response of Clostridioides difficile to clinically relevant antibiotics S Hromada, OS Venturelli Plos Biology 21 (5), e3002100, 2023 | 9 | 2023 |
| Microbes as communication & decision-making networked communities J Shaska, MC Gursoy, TD Ross, YY Cheng, A Krieger, M Thairu, ... IEEE Nanotechnology Magazine 17 (3), 32-41, 2023 | 2 | 2023 |
| Programming bacteria for multiplexed DNA detection YY Cheng, Z Chen, X Cao, TD Ross, TG Falbel, BM Burton, OS Venturelli Nature Communications 14 (2001), 2023 | 8* | 2023 |
| Methods of analyzing cells OS Venturelli, PA Romero, RHH Hsu, JW Tan US Patent 11,608,524, 2023 | 1 | 2023 |
| Microbial community-scale metabolic modeling predicts personalized short chain fatty acid production profiles in the human gut N Quinn-Bohmann, T Wilmanski, KR Sarmiento, L Levy, JW Lampe, ... bioRxiv, 2023 | 3 | 2023 |
| Efficient plasmid transfer via natural competence in a microbial co-culture YY Cheng, Z Zhou, JM Papadopoulos, JD Zuke, TG Falbel, ... Molecular Systems Biology 19 (e11406), 2023 | 11 | 2023 |
| What is the key challenge in engineering microbiomes? OS Venturelli, HH Wang, S Estrela, KC Huang, R Ledesma-Amaro, ... Cell Systems 14 (2), 85-90, 2023 | 3 | 2023 |
Ryan Hon HsuSalk Institute for Biological Science / University of California, San DiegoVerified email at health.ucsd.edu