Jakob Russel

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Søren J. SørensenUniversity of CopenhagenVerified email at bio.ku.dk
Mette BurmølleUniversity of CopenhagenVerified email at bio.ku.dk
Jonas Stenløkke MadsenAsst. Prof., PhD., Section of Microbiology, University of CopenhagenVerified email at bio.ku.dk
Shiraz A. ShahSenior Researcher, COPSACVerified email at dbac.dk
Rafael Pinilla-RedondoAssistant Professor, Section of Microbiology, University of Copenhagen,Verified email at bio.ku.dk
Jakob StokholmCOPSAC & Department of Food, University of CopenhagenVerified email at dbac.dk
Urvish TrivediAssistant Professor, University of CopenhagenVerified email at bio.ku.dk
Henriette Lyng RøderAsst. Prof., PhD., Section of Microbiology and Fermentation, University of CopenhagenVerified email at food.ku.dk
Asker BrejnrodUniversity of CopenhagenVerified email at bio.ku.dk
Professor Hans BisgaardCopenhagen Prospective Studies of Asthma in Childhood, University of CopenhagenVerified email at copsac.com
Morten Arendt RasmussenUniversity of Copenhagen, Dept Food Science and COPSACVerified email at dbac.dk
David Mayo-MuñozPhD, Fineran Lab, University of OtagoVerified email at postgrad.otago.ac.nz
Xuanji LiInstitution of Microbiology, Zhejiang University-Associate ProfessorVerified email at zju.edu.cn
Joseph NesmeUniversity of CopenhagenVerified email at bio.ku.dk
Shashank GuptaÖrebro UniversityVerified email at oru.se
Gisle VestergaardSenior Microbiome Scientist @ Chr. HansenVerified email at chr-hansen.com
Mathis Hjort HjelmsøPost Doc, Copenhagen Prospective Studies on Asthma in ChildhoodVerified email at dbac.dk
Martin Steen MortensenSenior Research, Gut, Health, And Microbes, National Food Institute, Technical University of DenmarkVerified email at food.dtu.dk
Roger A GarrettProfessor Emeritus, Archaea Centre, Department of Biology,, Copenhagen UniversityVerified email at bio.ku.dk
Jakob HerschendApplication Scientist, Household Care, Novozymes A/SVerified email at novozymes.com

Jakob Russel

Scientist, Clinical Microbiomics A/S

Verified email at clinical-microbiomics.com - Homepage

Microbiology Ecology Evolution Microbial Ecology


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METHODS FOR MODULATING CAS-EFFECTOR ACTIVITY R Pinilla-redondo, SC Wilpert, J Russel, SJ Sørensen US Patent App. 18/005,570, 2024		2024
MAGinator enables accurate profiling of de novo MAGs with strain-level phylogenies T Zachariasen, J Russel, C Petersen, GA Vestergaard, S Shah, ... Nature Communications 15 (1), 5734, 2024		2024
Type IV-A3 CRISPR-Cas systems drive inter-plasmid conflicts by acquiring spacers in trans F Benz, S Camara-Wilpert, J Russel, KG Wandera, R Čepaitė, ... Cell Host & Microbe 32 (6), 875-886. e9, 2024	3	2024
Co-localization of antibiotic resistance genes is widespread in the infant gut microbiome and associates with an immature gut microbial composition X Li, A Brejnrod, U Trivedi, J Russel, J Thorsen, SA Shah, GA Vestergaard, ... Microbiome 12 (1), 87, 2024	2	2024
Interspecific interactions facilitate keystone species in a multispecies biofilm that promotes plant growth N Yang, HL Røder, WA Wicaksono, B Wassermann, J Russel, X Li, ... The ISME Journal 18 (1), wrae012, 2024		2024
Differential responses of the gut microbiome and resistome to antibiotic exposures in infants and adults X Li, A Brejnrod, J Thorsen, T Zachariasen, U Trivedi, J Russel, ... Nature Communications 14 (1), 8526, 2023	5	2023
Fungi and bacteria in the beds of rural and urban infants correlate with later risk of atopic diseases J Lehtimäki, S Gupta, M Hjelmsø, S Shah, J Thorsen, MA Rasmussen, ... Clinical & Experimental Allergy 53 (12), 1268-1278, 2023	2	2023
Bacteriophages suppress CRISPR–Cas immunity using RNA-based anti-CRISPRs S Camara-Wilpert, D Mayo-Muñoz, J Russel, RD Fagerlund, JS Madsen, ... Nature 623 (7987), 601-607, 2023	19	2023
The role of plasmids in the gut microbiome during the first year of life W He, J Russel, F Klincke, J Nesme, SJ Sørensen bioRxiv, 2023.04. 05.535656, 2023	1	2023
Biofilm cultivation facilitates coexistence and adaptive evolution in an industrial bacterial community NNSE Henriksen, MF Hansen, HT Kiesewalter, J Russel, J Nesme, ... npj Biofilms and Microbiomes 8 (1), 59, 2022	8	2022
The developing airway and gut microbiota in early life is influenced by age of older siblings ED Christensen, MH Hjelmsø, J Thorsen, S Shah, T Redgwell, ... Microbiome 10 (1), 106, 2022	29	2022
CRISPR-Cas systems are widespread accessory elements across bacterial and archaeal plasmids R Pinilla-Redondo, J Russel, D Mayo-Muñoz, SA Shah, RA Garrett, ... Nucleic acids research 50 (8), 4315-4328, 2022	63	2022
Unexpected diversity among small-scale sample replicates of defined plant root compartments S Attia, J Russel, MS Mortensen, JS Madsen, SJ Sørensen The ISME journal 16 (4), 997-1003, 2022	33	2022
IncHI1A plasmids potentially facilitate horizontal flow of antibiotic resistance genes to pathogens in microbial communities of urban residential sewage AK Olesen, R Pinilla‐Redondo, MF Hansen, J Russel, A Dechesne, ... Molecular ecology 31 (5), 1595-1608, 2022	14	2022
Broad Dissemination of Plasmids across Groundwater-Fed Rapid Sand Filter Microbiomes R Pinilla-Redondo, AK Olesen, J Russel, LE de Vries, LD Christensen, ... mBio 12 (6), e03068-21, 2021	17*	2021
Biofilms can act as plasmid reserves in the absence of plasmid specific selection HL Røder, U Trivedi, J Russel, KN Kragh, J Herschend, I Thalsø-Madsen, ... npj Biofilms and Microbiomes 7 (1), 78, 2021	18	2021
Prophages in the infant gut are largely induced, and may be functionally relevant to their hosts TA Redgwell, J Thorsen, MA Petit, L Deng, GA Vestergaard, J Russel, ... bioRxiv, 2021.06. 25.449885, 2021	10	2021
The infant gut resistome associates with E. coli, environmental exposures, gut microbiome maturity, and asthma-associated bacterial composition X Li, J Stokholm, A Brejnrod, GA Vestergaard, J Russel, U Trivedi, ... Cell Host & Microbe, 2021	94	2021
MicEco: Various functions for microbial community data J Russel R package version 0.9 15, 2021	57*	2021
CRISPRCasTyper: Automated Identification, Annotation, and Classification of CRISPR-Cas Loci J Russel, R Pinilla-Redondo, D Mayo-Muñoz, SA Shah, SJ Sørensen The CRISPR Journal 3 (6), 462-469, 2020	165	2020

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