Mihaela Zavolan

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Jean HausserKarolinska Institutet & SciLifeLabVerified email at ki.se
Erik van NimwegenProfessor of computational systems biology, Biozentrum, University of BaselVerified email at unibas.ch
Markus HafnerSenior Investigator, NIAMS, National Institutes of HealthVerified email at nih.gov
Sébastien PfefferInstitut de Biologie Moléculaire et Cellulaire, CNRSVerified email at unistra.fr
Andreas R. GruberPaperpile LLCVerified email at paperpile.com
Markus LandthalerMax-Delbrück-Center for Molecular Medicine Berlin,IRI Life Sciences Humboldt-Universität zu BerlinVerified email at mdc-berlin.de
Lukas BurgerResearch Associate, Friedrich Miescher Institute for Biomedical ResearchVerified email at fmi.ch
Alexander KanitzBiozentrum, University of BaselVerified email at unibas.ch
Nikolaus RajewskyProfessor, Systems Biology, Max Delbruck Center for Molecular Medicine, BerlinVerified email at mdc-berlin.de
Souvik GhoshSenior ScientistVerified email at lonza.com
Afzal P SyedSingle-cell Open Lab, DKFZ, Heidelberg, GermanyVerified email at dkfz-heidelberg.de
Foivos GypasNovartis Institutes for Biomedical Research (NIBR)Verified email at novartis.com
Joao C GuimaraesFaculty of Medicine, University of Lisbon, PortugalVerified email at medicina.ulisboa.pt
Piotr J BalwierzPostdoctoral Researcher, Imperial College LondonVerified email at imperial.ac.uk
Hadi Jorjanipostdoc researcher at BiozentrumVerified email at unibas.ch
Giuseppe MacinoProfessore di Biologia Cellulare, Sapienza universityVerified email at bce.uniroma1.it
Alexander SchmidtBiozentrum, University of BaselVerified email at unibas.ch
David HumeMater Research Institute-University of QueenslandVerified email at uq.edu.au
Edward YangAssistant Professor of Radiology, Boston Children's HospitalVerified email at childrens.harvard.edu
Christian SchönbachNazarbayev University, School of Sciences and Humanities, Department of BiologyVerified email at nu.edu.kz

Mihaela Zavolan

Professor of Computational Biology, Biozentrum, University of Basel

Verified email at unibas.ch - Homepage

Computational models Gene Regulation small RNAs Polyadenylation Translation


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On the limits of inferring biophysical parameters of RBP-RNA interactions from in vitro RNA Bind’n Seq data N Schlusser, M Zavolan F1000Research 12, 742, 2024		2024
ZARP: A user-friendly and versatile RNA-seq analysis workflow M Katsantoni, F Gypas, CJ Herrmann, D Burri, M Bąk, P Iborra, K Agarwal, ... F1000Research 13, 533, 2024		2024
MAPP unravels frequent co-regulation of splicing and polyadenylation by RNA-binding proteins and their dysregulation in cancer M Bak, E van Nimwegen, IU Kouzel, T Gur, R Schmidt, M Zavolan, ... Nature Communications 15 (1), 4110, 2024	1	2024
T helper cells exhibit a dynamic and reversible 3′-UTR landscape D Seyres, O Gorka, R Schmidt, R Marone, M Zavolan, LT Jeker RNA 30 (4), 418-434, 2024		2024
Redefining SOX2 as a bifunctional mediator of transcription and adjusted translation control N Mittal, M Ataman, H Wang, S Candido, J Lötscher, S Velychko, ... Cancer Research 84 (6_Supplement), 255-255, 2024		2024
Current limitations in predicting mRNA translation with deep learning models N Schlusser, A Gonzalez, M Pandey, M Zavolan bioRxiv, 2024.01. 18.576214, 2024		2024
Extensible benchmarking of methods that identify and quantify polyadenylation sites from RNA-seq data S Bryce-Smith, D Burri, MR Gazzara, CJ Herrmann, W Danecka, ... RNA 29 (12), 1839-1855, 2023	7	2023
Impaired age-associated mitochondrial translation is mitigated by exercise and PGC-1α LM de Smalen, A Börsch, AB Leuchtmann, JF Gill, D Ritz, M Zavolan, ... Proceedings of the National Academy of Sciences 120 (36), e2302360120, 2023	4	2023
Identification of experimentally-supported poly (A) sites in single-cell RNA-seq data with SCINPAS Y Moon, D Burri, M Zavolan NAR genomics and bioinformatics 5 (3), lqad079, 2023	1	2023
Walter Keller (1938–2023): a tribute from his mentees D Bohmann, M O'Connell, D Frendewey, A Gerber, N Hernandez, ... RNA 29 (9), v-xiii, 2023		2023
Walter Keller (1938-2023): a tribute from his mentees M Zavolan RNA, rna. 079742.123, 2023		2023
Improved analysis of (e) CLIP data with RCRUNCH yields a compendium of RNA-binding protein binding sites and motifs M Katsantoni, E van Nimwegen, M Zavolan Genome Biology 24 (1), 77, 2023	6	2023
Ribosomal protein RPL39L is an efficiency factor in the cotranslational folding of proteins with alpha helical domains A Banerjee, M Ataman, MJ Smialek, D Mookherjee, J Rabl, A Mironov, ... bioRxiv, 2023.04. 03.535332, 2023	1	2023
CCAR1 promotes DNA repair via an unanticipated role in alternative splicing ME Karasu, B Joseph, A Mironov, MS Schroeder, A Gvozdenovic, ... bioRxiv, 2023.09. 18.557780, 2023		2023
Dual roles of mTORC1-dependent activation of the ubiquitin-proteasome system in muscle proteostasis MS Kaiser, G Milan, DJ Ham, S Lin, F Oliveri, K Chojnowska, LA Tintignac, ... Communications biology 5 (1), 1141, 2022	18	2022
A novel approach to single‐cell analysis reveals intrinsic differences in immune marker expression in unstimulated BALB/c and C57BL/6 macrophages J Breda, A Banerjee, R Jayachandran, J Pieters, M Zavolan FEBS letters 596 (20), 2630-2643, 2022	3	2022
Cholesterol deprivation drives DHEA biosynthesis in human adrenals E Pignatti, EM Altinkilic, K Bräutigam, M Grössl, A Perren, M Zavolan, ... Endocrinology 163 (7), bqac076, 2022	7	2022
Distinct and additive effects of calorie restriction and rapamycin in aging skeletal muscle DJ Ham, A Börsch, K Chojnowska, S Lin, AB Leuchtmann, AS Ham, ... Nature communications 13 (1), 2025, 2022	39	2022
CFIm-mediated alternative polyadenylation remodels cellular signaling and miRNA biogenesis S Ghosh, M Ataman, M Bak, A Börsch, A Schmidt, K Buczak, G Martin, ... Nucleic acids research 50 (6), 3096-3114, 2022	14	2022
Untargeted sequencing of circulating microRNAs in a healthy and diseased older population L Streese, P Demougin, P Iborra, A Kanitz, A Deiseroth, JM Kröpfl, ... Scientific reports 12 (1), 2991, 2022	7	2022

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