Articles with public access mandates - Ivo HofackerLearn more
Not available anywhere: 9
Phylogenetic and Chemical Probing Information as Soft Constraints in RNA Secondary Structure Prediction
S von Löhneysen, T Spicher, Y Varenyk, HT Yao, R Lorenz, I Hofacker, ...
Journal of Computational Biology 31 (6), 549-563, 2024
Mandates: Austrian Science Fund
Phylogenetic information as soft constraints in RNA secondary structure prediction
S von Löhneysen, T Spicher, Y Varenyk, HT Yao, R Lorenz, I Hofacker, ...
International Symposium on Bioinformatics Research and Applications, 267-279, 2023
Mandates: Austrian Science Fund
Efficient algorithms for co-folding of multiple RNAs
R Lorenz, C Flamm, IL Hofacker, PF Stadler
International Joint Conference on Biomedical Engineering Systems and …, 2020
Mandates: Austrian Science Fund, Federal Ministry of Education and Research, Germany
Comparative RNA genomics
R Backofen, J Gorodkin, IL Hofacker, PF Stadler
Comparative Genomics: Methods and Protocols, 363-400, 2018
Mandates: German Research Foundation, Danish Council for Independent Research …
Concepts and introduction to RNA bioinformatics
J Gorodkin, IL Hofacker, WL Ruzzo
RNA Sequence, Structure, and Function: Computational and Bioinformatic …, 2014
Mandates: Danish Council for Independent Research, Danish Council for Strategic Research
Predicting RNA structure: advances and limitations
IL Hofacker, R Lorenz
RNA folding: methods and protocols, 1-19, 2014
Mandates: Austrian Science Fund
Identification of new protein coding sequences and signal peptidase cleavage sites of Helicobacter pylori strain 26695 by proteogenomics
SA Müller, S Findeiß, SR Pernitzsch, DK Wissenbach, PF Stadler, ...
Journal of proteomics 86, 27-42, 2013
Mandates: German Research Foundation
RNAs Everywhere
R Backofen, A Mosig, SJ Prohaska, D Rose, PF Stadler, A Tanzer, ...
Mandates: German Research Foundation
Comparative Analysis of Cyclic Sequences
A Mosig, IL Hofacker, PF Stadler
Mandates: German Research Foundation
Available somewhere: 108
tRNA expression and modification landscapes, and their dynamics during zebrafish embryo development
T Rappol, M Waldl, A Chugunova, IL Hofacker, A Pauli, E Vilardo
Nucleic Acids Research, gkae595, 2024
Mandates: Austrian Science Fund, European Commission, Human Frontier Science Program
3D feasibility of 2D RNA–RNA interaction paths by stepwise folding simulations
IK Beckmann, M Waldl, S Will, IL Hofacker
RNA 30 (2), 113-123, 2024
Mandates: Austrian Science Fund, Agence Nationale de la Recherche
Avirulent phenotype promotes Bordetella pertussis adaptation to the intramacrophage environment
MR Farman, D Petráčková, D Kumar, J Držmíšek, A Saha, I Čurnová, ...
Emerging Microbes & Infections 12 (1), e2146536, 2023
Mandates: Austrian Science Fund
Modified RNAs and predictions with the ViennaRNA Package
Y Varenyk, T Spicher, IL Hofacker, R Lorenz
Bioinformatics 39 (11), btad696, 2023
Mandates: Austrian Science Fund
Mono-valent salt corrections for RNA secondary structures in the ViennaRNA package
HT Yao, R Lorenz, IL Hofacker, PF Stadler
Algorithms for Molecular Biology 18 (1), 8, 2023
Mandates: Austrian Science Fund, German Research Foundation
Investigating RNA–RNA interactions through computational and biophysical analysis
T Mrozowich, SM Park, M Waldl, A Henrickson, S Tersteeg, CR Nelson, ...
Nucleic acids research 51 (9), 4588-4601, 2023
Mandates: US National Science Foundation, US National Institutes of Health, Austrian …
MicroRNA-Mediated Obstruction of Stem-loop Alternative Splicing is a global mechanism for the regulation of alternative splicing
K Ruan, M Kubat, I Hofacker, S Wuchty, RG Zhai
Mandates: US National Institutes of Health
Salt corrections for RNA secondary structures in the ViennaRNA package
HT Yao, R Lorenz, IL Hofacker, PF Stadler
bioRxiv, 2023.04. 07.536000, 2023
Mandates: Austrian Science Fund, German Research Foundation
DrTransformer: heuristic cotranscriptional RNA folding using the nearest neighbor energy model
S Badelt, R Lorenz, IL Hofacker
Bioinformatics 39 (1), btad034, 2023
Mandates: US National Science Foundation, Austrian Science Fund
Insights into the secondary and tertiary structure of the bovine viral diarrhea virus internal ribosome entry site
D Gosavi, I Wower, IK Beckmann, IL Hofacker, J Wower, MT Wolfinger, ...
RNA biology 19 (1), 496-506, 2022
Mandates: Austrian Science Fund
Caveats to deep learning approaches to RNA secondary structure prediction
C Flamm, J Wielach, MT Wolfinger, S Badelt, R Lorenz, IL Hofacker
Frontiers in Bioinformatics 2, 835422, 2022
Mandates: Austrian Science Fund
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