| Methanotrophic Methanoperedens archaea host diverse and interacting extrachromosomal elements LD Shi, J West-Roberts, MC Schoelmerich, PI Penev, LX Chen, Y Amano, ... Nature Microbiology, 1-12, 2024 | | 2024 |
| Adaptive strategies and ecological roles of phages in habitats under physicochemical stress D Huang, R Xia, C Chen, J Liao, L Chen, D Wang, PJJ Alvarez, P Yu Trends in Microbiology, 2024 | 3 | 2024 |
| COBRA improves the completeness and contiguity of viral genomes assembled from metagenomes LX Chen, JF Banfield Nature Microbiology 9 (3), 737-750, 2024 | 5 | 2024 |
| Infant gut DNA bacteriophage strain persistence during the first 3 years of life YC Lou, LX Chen, AL Borges, J West-Roberts, BA Firek, MJ Morowitz, ... Cell Host & Microbe 32 (1), 35-47. e6, 2024 | 5 | 2024 |
| CasPEDIA Database: a functional classification system for class 2 CRISPR-Cas enzymes BA Adler, MI Trinidad, D Bellieny-Rabelo, E Zhang, HM Karp, ... Nucleic acids research 52 (D1), D590-D596, 2024 | 7 | 2024 |
| Host translation machinery is not a barrier to phages that interact with both CPR and non-CPR bacteria J Liu, AL Jaffe, LX Chen, B Bor, JF Banfield Mbio 14 (6), e01766-23, 2023 | | 2023 |
| Eukaryotic RNA-guided endonucleases evolved from a unique clade of bacterial enzymes PH Yoon, P Skopintsev, H Shi, LX Chen, BA Adler, M Al-Shimary, ... Nucleic Acids Research 51 (22), 12414-12427, 2023 | 6 | 2023 |
| Seasonal Succession, Host Associations and Biochemical Roles of Aquatic Viruses in a Eutrophic Lake Plagued by Cyanobacterial Blooms L Yuan, P Yu, X Huang, Z Zhao, L Chen, F Ju | | 2023 |
| Inference and reconstruction of the heimdallarchaeial ancestry of eukaryotes L Eme, D Tamarit, EF Caceres, CW Stairs, V De Anda, ME Schön, ... Nature 618 (7967), 992-999, 2023 | 70 | 2023 |
| COBRA improves the quality of viral genomes assembled from metagenomes LX Chen, JF Banfield bioRxiv, 2023.05. 30.542503, 2023 | 1 | 2023 |
| O2 partitioning of sulfur oxidizing bacteria drives acidity and thiosulfate distributions in mining waters KJ Whaley-Martin, LX Chen, TC Nelson, J Gordon, R Kantor, LE Twible, ... Nature Communications 14 (1), 2006, 2023 | 5 | 2023 |
| Infant gut bacteriophage strain persistence during the first three years of life YC Lou, LX Chen, AL Borges, JA West-Roberts, BA Firek, M Morowitz, ... bioRxiv, 2023.08. 07.552389, 2023 | | 2023 |
| Phage-encoded ribosomal protein S21 expression is linked to late-stage phage replication LX Chen, AL Jaffe, AL Borges, PI Penev, TC Nelson, LA Warren, ... ISME communications 2 (1), 31, 2022 | 10 | 2022 |
| Long-Term Incubation of Lake Water Enables Genomic Sampling of Consortia Involving Planctomycetes and Candidate Phyla Radiation Bacteria AL Jaffe, M Fuster, MC Schoelmerich, LX Chen, J Colombet, H Billard, ... Msystems 7 (2), e00223-22, 2022 | 2 | 2022 |
| Detection and enumeration of Lak megaphages in microbiome samples by endpoint and quantitative PCR MA Crisci, PM Corsini, N Bordin, LX Chen, JF Banfield, JM Santini STAR protocols 3 (1), 101029, 2022 | | 2022 |
| Alum addition triggers hypoxia in an engineered pit lake GL Jessen, LX Chen, JF Mori, TEC Nelson, GF Slater, MBJ Lindsay, ... Microorganisms 10 (3), 510, 2022 | 6 | 2022 |
| Alum Addition Triggers Hypoxia in an Engineered Pit Lake. Microorganisms 2022, 10, 510 GL Jessen, LX Chen, JF Mori, TEC Nelson, GF Slater, MBJ Lindsay, ... s Note: MDPI stays neutral with regard to jurisdictional claims in published …, 2022 | | 2022 |
| Acidity and sulfur oxidation intermediate concentrations controlled by O2-driven partitioning of sulfur oxidizing bacteria in a mine tailings impoundment KJ Whaley-Martin, LX Chen, TC Nelson, J Gordon, R Kantor, LE Twible, ... bioRxiv, 2021.09. 16.460096, 2021 | 3 | 2021 |
| The Chloroflexi supergroup is metabolically diverse and representatives have novel genes for non-photosynthesis based CO2 fixation JA West-Roberts, PB Matheus-Carnevali, MC Schoelmerich, B Al-Shayeb, ... BioRxiv, 2021.08. 23.457424, 2021 | 18 | 2021 |
| Closely related Lak megaphages replicate in the microbiomes of diverse animals MA Crisci, LX Chen, AE Devoto, AL Borges, N Bordin, R Sachdeva, A Tett, ... Iscience 24 (8), 2021 | 19 | 2021 |
Jillian BANFIELDUniversity of California BerkeleyVerified email at berkeley.edu
