| 1P481 Real-time Structure Based Queries at the Protein Data Bank japan (23. Bioinformatics, genomics and proteomics (I), Poster Session, Abstract, Meeting Program of EABS & BSJ … DM Standley, H Toh, H Nakamura Seibutsu Butsuri 46 (supplement2), S267, 2006 | | 2006 |
| 2SCP-07 Intrinsic disorder mediates cooperative signal transduction in STIM1 (構造バイオインフォマティクスによる蛋白質機能予測・解析, シンポジウム, 第 52 回日本生物物理学会年会 (2014 年度)) DM Standley 生物物理 54 (supplement1-2), S133, 2014 | | 2014 |
| 3P294 Structural modeling for protein complexes using small angle x-ray scattering (Bioinformatics: Structural genomics, The 48th Annual Meeting of the Biophysical Society of … K Oshima, D Standley, E Kanamori, Y Murakami, T Oroguchi, M Ikeguchi, ... Seibutsu Butsuri 50 (supplement2), S197, 2010 | | 2010 |
| 3P294 X 線小角散乱を用いたタンパク質複合体の構造モデリング (生命情報科学-構造ゲノミクス, 第 48 回日本生物物理学会年会) O Kanji, S Daron, K Eiji, M Yoichi, O Tomotaka, S Mamoru, N Haruki 生物物理 50 (supplement2), S197, 2010 | | 2010 |
| A branch and bound algorithm for protein structure refinement from sparse NMR data sets DM Standley, VA Eyrich, AK Felts, RA Friesner, AE McDermott Journal of molecular biology 285 (4), 1691-1710, 1999 | 50 | 1999 |
| A mutation in the immunoproteasome subunit PSMB8 causes autoinflammation and lipodystrophy in humans A Kitamura, Y Maekawa, H Uehara, K Izumi, I Kawachi, M Nishizawa, ... The Journal of clinical investigation 121 (10), 4150-4160, 2011 | 325 | 2011 |
| A novel function prediction approach using protein overlap networks S Liang, D Zheng, DM Standley, H Guo, C Zhang BMC systems biology 7, 1-10, 2013 | 23 | 2013 |
| A novel protein distance matrix based on the minimum arc-length between two amino-acid residues on the surface of a globular protein D Hall, S Li, K Yamashita, R Azuma, JA Carver, DM Standley Biophysical Chemistry 190, 50-55, 2014 | 5 | 2014 |
| A novel unbiased measure for motif co-occurrence predicts combinatorial regulation of transcription A Vandenbon, Y Kumagai, S Akira, DM Standley BMC genomics 13, 1-15, 2012 | 13 | 2012 |
| A Parzen window-based approach for the detection of locally enriched transcription factor binding sites A Vandenbon, Y Kumagai, S Teraguchi, KM Amada, S Akira, DM Standley BMC bioinformatics 14, 1-13, 2013 | 3 | 2013 |
| A QM/MM Molecular Dynamics Simulation Study of the Cis-Trans Isomerization Process of N-Methylacetamide Y Yasushige Peptide science: proceedings of the... Japanese Peptide Symposium 2010, 151, 2011 | | 2011 |
| A simple method for predicting emerging SARS-CoV-2 variants using outgroups infecting non-human hosts K Katoh, DM Standley | | 2021 |
| A simple method to control over-alignment in the MAFFT multiple sequence alignment program K Katoh, DM Standley Bioinformatics 32 (13), 1933-1942, 2016 | 511 | 2016 |
| A single polymorphic amino acid on Toxoplasma gondii kinase ROP16 determines the direct and strain-specific activation of Stat3 M Yamamoto, DM Standley, S Takashima, H Saiga, M Okuyama, ... Journal of Experimental Medicine 206 (12), 2747-2760, 2009 | 298 | 2009 |
| AB 1N1T1O PROTE1N STRUCTURE PRED1CT1ON US1NG A S1ZE-DEPENDENT TERT1ARY FOLD1NG POTENT1AL DM STANDLEY Computational methods for protein folding, 223, 2002 | | 2002 |
| Ab Initio Protein Structure Prediction Using a Size‐dependent Tertiary Folding Potential VA Eyrich, RA Friesner, DM Standley Computational Methods for Protein Folding 120, 223-263, 2002 | 7 | 2002 |
| Ab initio simulation of a 57‐residue protein in explicit solvent reproduces the native conformation in the lowest free‐energy cluster J Ikebe, DM Standley, H Nakamura, J Higo Protein Science 20 (1), 187-196, 2011 | 25 | 2011 |
| Ab Initio: Prediction Reports-Protein Structure Prediction Using a Combination of Sequence-Based Alignment, Constrained Energy Minimization, and Structural Alignment Published … DM Standley, VA Eyrich, Y An, DL Pincus, JR Gunn, RA Friesner Proteins-Structure Function and Genetics, 133-139, 2001 | | 2001 |
| AbAdapt: an adaptive approach to predicting antibody–antigen complex structures from sequence A Davila, Z Xu, S Li, J Rozewicki, J Wilamowski, S Kotelnikov, D Kozakov, ... Bioinformatics Advances 2 (1), vbac015, 2022 | 22 | 2022 |
| Access to both enantiomers of substituted 2-tetralol analogs by a highly enantioselective reductase AA Koesoema, DM Standley, M Tamura, T Matsuda Tetrahedron Letters 61 (13), 151682, 2020 | 12 | 2020 |