Adam Siepel

Cited by

	All	Since 2019
Citations	39833	12696
h-index	66	45
i10-index	109	89

2500

1250

625

1875

2003200420052006200720082009201020112012201320142015201620172018201920202021202220232024100 251 473 711 1398 1721 1645 1647 1887 2133 2036 2232 2204 2279 2172 2388 2493 2262 2404 2305 2059 1165

Public access

View all

75 articles

1 article

available

not available

Based on funding mandates

Co-authors

Melissa HubiszCornell UniversityVerified email at cornell.edu
David HausslerScientific Director, UC Santa Cruz Genomics Institute, University of California, Santa CruzVerified email at soe.ucsc.edu
Charles G. DankoAssociate Professor, Cornell UniversityVerified email at cornell.edu
Katherine S PollardDirector, Gladstone Institute of Data Science & Biotechnology / UCSFVerified email at gladstone.ucsf.edu
Kate RosenbloomUC Santa Cruz Genomics Institute, UCSC Genome BrowserVerified email at soe.ucsc.edu
Ilan GronauHrezliya Interdisciplinary Center (IDC), Herzliya, IsraelVerified email at idc.ac.il
Jakob Skou PedersenProfessor at Department of Molecular Medicine, Aarhus UniversityVerified email at ki.au.dk
john lisProfessor of Molecular Biology & Genetics, Cornell UniversityVerified email at cornell.edu
Brad GulkoPost doctoral researcher, Cold Spring Harbor LabVerified email at cshl.edu
W James KentUC Santa Cruz Genomics Institute, University of California Santa Cruz, UCSC Genome BrowserVerified email at soe.ucsc.edu
Webb MillerPenn State University, UC Santa Barbara, ArizonaVerified email at bx.psu.edu
W. Lee KrausUniversity of Texas Southwestern Medical CenterVerified email at utsouthwestern.edu
Yifei (Yi-Fei) HuangPennsylvania State UniversityVerified email at psu.edu
Leighton CoreUniversity of ConnecticutVerified email at uconn.edu
Eric C. LaiMember, Sloan-Kettering InstituteVerified email at mskcc.org
Sofie SalamaActing Professor of MCD Bio; Faculty Dir. of Diversity UCSC Genomics Inst.Verified email at ucsc.edu
Tomas VinarComenius University in BratislavaVerified email at fmph.uniba.sk
Angie S. HinrichsUC Santa Cruz Genomics Institute, UCSC Genome BrowserVerified email at soe.ucsc.edu
Hiram ClawsonUC Santa Cruz Genomics Institute, UCSC Genome BrowserVerified email at ucsc.edu
Noah DuklerIlluminaVerified email at cshl.edu

Adam Siepel

Simons Center for Quantitative Biology, Cold Spring Harbor Laboratory

Verified email at cshl.edu - Homepage

genomics molecular evolution computational biology gene regulation population genetics


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
28-way vertebrate alignment and conservation track in the UCSC Genome Browser W Miller, K Rosenbloom, RC Hardison, M Hou, J Taylor, B Raney, ... Genome research 17 (12), 1797-1808, 2007	319	2007
A community-maintained standard library of population genetic models JR Adrion, CB Cole, N Dukler, JG Galloway, AL Gladstein, G Gower, ... elife 9, e54967, 2020	128	2020
A computer program designed to screen rapidly for HIV type 1 intersubtype recombinant sequences AC Siepel, AL Halpern, C Macken, BTM Korber AIDS research and human retroviruses 11 (11), 1413-1416, 1995	297	1995
A deep-learning approach for inference of selective sweeps from the ancestral recombination graph HA Hejase, Z Mo, L Campagna, A Siepel Molecular Biology and Evolution 39 (1), msab332, 2022	34*	2022
A distal enhancer and an ultraconserved exon are derived from a novel retroposon G Bejerano, CB Lowe, N Ahituv, B King, A Siepel, SR Salama, EM Rubin, ... Nature 441 (7089), 87-90, 2006	580	2006
A Fitness Consequence Map of the Rice Genome Z Joly-Lopez, AE Platts, B Gulko, JY Choi, SC Groen, X Zhong, A Siepel, ...
A high-resolution map of human evolutionary constraint using 29 mammals K Lindblad-Toh, M Garber, O Zuk, MF Lin, BJ Parker, S Washietl, ... Nature 478 (7370), 476-482, 2011	1275	2011
A method for calculating probabilities of fitness consequences for point mutations across the human genome B Gulko, MJ Hubisz, I Gronau, A Siepel Nature genetics 47 (3), 276-283, 2015	315	2015
A model-based analysis of GC-biased gene conversion in the human and chimpanzee genomes JA Capra, MJ Hubisz, D Kostka, KS Pollard, A Siepel PLoS genetics 9 (8), e1003684, 2013	81	2013
A multiple alignment workflow shows the effect of repeat masking and parameter tuning on alignment in plants Y Wu, L Johnson, B Song, C Romay, M Stitzer, A Siepel, E Buckler, ... The Plant Genome 15 (2), e20204, 2022	7	2022
A multiple genome alignment workflow shows the impact of repeat masking and parameter tuning on alignment of functional regions in plants Y Wu, L Johnson, B Song, C Romay, M Stitzer, A Siepel, E Buckler, ... BioRxiv, 2021.06. 01.446647, 2021	2	2021
A rapid, extensive, and transient transcriptional response to estrogen signaling in breast cancer cells N Hah, CG Danko, L Core, JJ Waterfall, A Siepel, JT Lis, WL Kraus Cell 145 (4), 622-634, 2011	548	2011
A simple genetic architecture underlies morphological variation in dogs AR Boyko, P Quignon, L Li, JJ Schoenebeck, JD Degenhardt, ... PLoS biology 8 (8), e1000451, 2010	528	2010
A simplified hillslope erosion model with vegetation elements for practical applications AC Siepel, TS Steenhuis, CW Rose, JY Parlange, GF McIsaac Journal of Hydrology 258 (1-4), 111-121, 2002	78	2002
A unified probabilistic modeling framework for eukaryotic transcription based on nascent RNA sequencing data A Siepel BioRxiv, 2021.01. 12.426408, 2021	9	2021
Accelerated sequence divergence of conserved genomic elements in Drosophila melanogaster AK Holloway, DJ Begun, A Siepel, KS Pollard Genome research 18 (10), 1592-1601, 2008	29	2008
Accurate prediction of inducible transcription factor binding intensities in vivo MJ Guertin, AL Martins, A Siepel, JT Lis PLoS genetics 8 (3), e1002610, 2012	69	2012
ACE: a probabilistic model for characterizing gene-level essentiality in CRISPR screens ER Hutton, CR Vakoc, A Siepel Genome Biology 22, 1-25, 2021	6	2021
Adaptive evolution of testis-specific, recently evolved, clustered miRNAs in Drosophila J Mohammed, D Bortolamiol-Becet, AS Flynt, I Gronau, A Siepel, EC Lai Rna 20 (8), 1195-1209, 2014	49	2014
An algorithm to enumerate all sorting reversals AC Siepel Proceedings of the sixth annual international conference on computational …, 2002	59	2002

The system can't perform the operation now. Try again later.

Articles 1–20

Citations per year

Duplicate citations

Merged citations

Add co-authorsCo-authors

Follow

Cited by

Co-authors