Matthew T. Weirauch

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Xiaoting ChenCincinnati Children's Hospital Medical CenterVerified email at cchmc.org
Timothy R. HughesUniversity of TorontoVerified email at utoronto.ca
Leah C KottyanAssociate Professor, Cincinnati Children's Hospital Medical CenterVerified email at cchmc.org
Nathan SalomonisAssociate Professor Cincinnati Children's Hospital Medical CenterVerified email at cchmc.org
Artem BarskiCincinnati Childrens HospitalVerified email at cchmc.org
Samuel A. LambertAssistant Professor, University of CambridgeVerified email at medschl.cam.ac.uk
Hong JiUniversity of California DavisVerified email at ucdavis.edu
k m kaufmanVerified email at cchmc.org
John B HarleyStaff Physician, US Department of Veterans Affairs Medical Center, CincinnatiVerified email at va.gov
Brendan FreyFounder & CEO, Deep Genomics; Co-Founder, Vector Institute; Professor, University of TorontoVerified email at psi.toronto.edu
Marc E. Rothenberg, MD, PhDProfessor of Pediatrics, Cincinnati Children's Hospital Medical CenterVerified email at cchmc.org
Joshua M StuartUC Santa Cruz Genomics InstituteVerified email at ucsc.edu
Hamed S. NajafabadiAssociate Professor at McGill UniversityVerified email at mcgill.ca
Jussi TaipaleUniversity of Cambridge, Department of BiochemistryVerified email at cam.ac.uk
Xiaoming LuCincinnati Children's Hospital Medical CenterVerified email at cchmc.org
Daniel T. StarczynowskiCincinnati Children's Hospital Medical CenterVerified email at cchmc.org
Albertha J M WalhoutProfessor and Chair, Department of Systems Biology, UMass Medical SchoolVerified email at umassmed.edu
Quaid MorrisComputational and Systems Biology Program, Memorial Sloan Kettering Cancer CenterVerified email at mskcc.org
Juan Fuxman BassBoston UniversityVerified email at bu.edu
Raphael KopanCincinnati Children's Hospital Medical CenterVerified email at cchmc.org

Matthew T. Weirauch

Other namesMatt Weirauch, Matthew Weirauch

Professor, Cincinnati Children's Hospital

Verified email at cchmc.org

Computational Biology Transcriptional Regulation Functional Genomics Bioinformatics Genomics


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“Stripe” transcription factors provide accessibility to co-binding partners in mammalian genomes Y Zhao, SV Vartak, A Conte, X Wang, DA Garcia, E Stevens, SK Jung, ... Molecular cell 82 (18), 3398-3411. e11, 2022	26	2022
11q13 Is an Allergic Risk-Locus That Increases Eoe Risk and Increases LRRC32 Expression LC Kottyan, RJ D'Mello, D Miller, A Maddox, E Stucke, M Rochman, ... Journal of Allergy and Clinical Immunology 137 (2), AB279, 2016		2016
5-Hydroxymethylcytosine in E-box motifs ACAT\| GTG and ACAC\| GTG increases DNA-binding of the B-HLH transcription factor TCF4 S Khund-Sayeed, X He, T Holzberg, J Wang, D Rajagopal, S Upadhyay, ... Integrative Biology 8 (9), 936-945, 2016	20	2016
A catalogue of eukaryotic transcription factor types, their evolutionary origin, and species distribution MT Weirauch, TR Hughes A handbook of transcription factors, 25-73, 2011	154	2011
A compendium of RNA-binding motifs for decoding gene regulation D Ray, H Kazan, KB Cook, MT Weirauch, HS Najafabadi, X Li, ... Nature 499 (7457), 172-177, 2013	1522	2013
A DNA tumor virus globally reprograms host 3D genome architecture to achieve immortal growth C Wang, X Liu, J Liang, Y Narita, W Ding, D Li, L Zhang, H Wang, ... Nature communications 14 (1), 1598, 2023	8	2023
A FOXO1-induced oncogenic network defines the AML1-ETO preleukemic program S Lin, A Ptasinska, X Chen, M Shrestha, SA Assi, PS Chin, MR Imperato, ... Blood, The Journal of the American Society of Hematology 130 (10), 1213-1222, 2017	42	2017
A functional mechanism for a non-coding variant near AGTR2 associated with risk for preterm birth L Wang, RM Rossi, X Chen, J Chen, J Runyon, M Chawla, D Miller, ... BMC medicine 21 (1), 258, 2023	1	2023
A global analysis of genetic interactions in Caenorhabditis elegans AB Byrne, MT Weirauch, V Wong, M Koeva, SJ Dixon, JM Stuart, PJ Roy Journal of biology 6, 1-27, 2007	200	2007
A model species for agricultural pest genomics: the genome of the Colorado potato beetle, Leptinotarsa decemlineata (Coleoptera: Chrysomelidae) SD Schoville, YH Chen, MN Andersson, JB Benoit, A Bhandari, ... Scientific reports 8 (1), 1931, 2018	225	2018
A plausibly causal functional lupus-associated risk variant in the STAT1–STAT4 locus ZH Patel, X Lu, D Miller, CR Forney, J Lee, A Lynch, C Schroeder, L Parks, ... Human molecular genetics 27 (13), 2392-2404, 2018	36	2018
A search engine to identify pathway genes from expression data on multiple organisms C Chen, MT Weirauch, CC Powell, AC Zambon, JM Stuart BMC systems biology 1, 1-19, 2007	10	2007
A versatile, highly efficient, and potentially safer piggyBac transposon system for mammalian genome manipulations YJJ Meir, A Lin, MF Huang, JR Lin, MT Weirauch, HC Chou, SJA Lin, ... The FASEB Journal 27 (11), 4429-4443, 2013	30	2013
Accessible chromatin maps of inflammatory bowel disease intestine nominate cell-type mediators of genetic disease risk JA Wayman, Z Yang, E Angerman, E Bonkowski, I Jurickova, X Chen, ... bioRxiv, 2024.02. 09.579678, 2024		2024
Activation of archaeal transcription mediated by recruitment of transcription factor B SM Ochs, S Thumann, R Richau, MT Weirauch, TM Lowe, M Thomm, ... Journal of Biological Chemistry 287 (22), 18863-18871, 2012	44	2012
Affinity regression predicts the recognition code of nucleic acid–binding proteins R Pelossof, I Singh, JL Yang, MT Weirauch, TR Hughes, CS Leslie Nature biotechnology 33 (12), 1242-1249, 2015	56	2015
After the Infection: A Survey of Pathogens and Non-communicable Human Disease M Lape, D Schnell, S Parameswaran, K Ernst, N Salomonis, LJ Martin, ... medRxiv, 2023		2023
Aiolos regulates eosinophil migration into tissues JM Felton, C Bouffi, JT Schwartz, KL Schollaert, A Malik, S Vallabh, ... Mucosal immunology 14 (6), 1271-1281, 2021	8	2021
AMP kinase promotes glioblastoma bioenergetics and tumour growth RR Chhipa, Q Fan, J Anderson, R Muraleedharan, Y Huang, G Ciraolo, ... Nature cell biology 20 (7), 823-835, 2018	130	2018
Amphioxus functional genomics and the origins of vertebrate gene regulation F Marlétaz, PN Firbas, I Maeso, JJ Tena, O Bogdanovic, M Perry, ... Nature 564 (7734), 64-70, 2018	239	2018

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