| 1." Molecular Characterization of Polymer and Polymer Blend Surfaces. Combined Sum Frequency Generation Surface Vibrational Spectroscopy and Scanning Force Microscopy Studies … Y Tanaka, S Lin, W Aono, T Suzuki, JWM Nissink, J van der Maas, Y Cao, ... Appl.'Phys. A 69, 507, 1999 | | 1999 |
| 1D and 2D annotation enrichment: a statistical method integrating quantitative proteomics with complementary high-throughput data J Cox, M Mann BMC bioinformatics 13, 1-11, 2012 | 635 | 2012 |
| 2.1 article 1-Andromeda: A Peptide Search Engine Integrated into the MaxQuant Environment J Cox, N Neuhauser Computational approaches to enhance mass spectrometry-based proteomics 10, 29, 2011 | | 2011 |
| 3.1 MaxLFQ allows accurate proteome-wide label-free quantification J Cox, MY Hein A Human Interactome, 39, 0 | | |
| 4 Extended Data Analysis Tools for Shotgun Proteomics J Cox, N Neuhauser, A Michalski, RA Scheltema, M Mann Overcoming Challenges of Shotgun Proteomics 22 (8), 63, 2011 | | 2011 |
| A “proteomic ruler” for protein copy number and concentration estimation without spike-in standards JR Wiśniewski, MY Hein, J Cox, M Mann Molecular & cellular proteomics 13 (12), 3497-3506, 2014 | 583 | 2014 |
| A framework for intelligent data acquisition and real-time database searching for shotgun proteomics J Graumann, RA Scheltema, Y Zhang, J Cox, M Mann Molecular & Cellular Proteomics 11 (3), 2012 | 73 | 2012 |
| A human interactome in three quantitative dimensions organized by stoichiometries and abundances MY Hein, NC Hubner, I Poser, J Cox, N Nagaraj, Y Toyoda, IA Gak, ... Cell 163 (3), 712-723, 2015 | 1295 | 2015 |
| A large synthetic peptide and phosphopeptide reference library for mass spectrometry–based proteomics H Marx, S Lemeer, JE Schliep, L Matheron, S Mohammed, J Cox, M Mann, ... Nature biotechnology 31 (6), 557-564, 2013 | 191 | 2013 |
| A mass spectrometry-based approach for mapping protein subcellular localization reveals the spatial proteome of mouse primary neurons DN Itzhak, C Davies, S Tyanova, A Mishra, J Williamson, R Antrobus, ... Cell reports 20 (11), 2706-2718, 2017 | 116 | 2017 |
| A network module for the Perseus software for computational proteomics facilitates proteome interaction graph analysis JD Rudolph, J Cox Journal of proteome research 18 (5), 2052-2064, 2019 | 69 | 2019 |
| A novel chromatographic method allows on-line reanalysis of the proteome LF Waanders, R Almeida, S Prosser, J Cox, D Eikel, MH Allen, GA Schultz, ... Molecular & Cellular Proteomics 7 (8), 1452-1459, 2008 | 30 | 2008 |
| A novel chromatographic method allows online reanalyses in proteomic investigations and acquiring more information from biological samples R Almeida, LF Waanders, S Prosser, J Cox, D Eikel, K Vlak, MH Allen, ... Universidad de Córdoba, Servicio de Publicaciones, 2009 | | 2009 |
| A practical guide to the MaxQuant computational platform for SILAC-based quantitative proteomics J Cox, I Matic, M Hilger, N Nagaraj, M Selbach, JV Olsen, M Mann Nature protocols 4 (5), 698-705, 2009 | 873 | 2009 |
| A proteome-wide, quantitative survey of in vivo ubiquitylation sites reveals widespread regulatory roles SA Wagner, P Beli, BT Weinert, ML Nielsen, J Cox, M Mann, C Choudhary Molecular & Cellular Proteomics 10 (10), 2011 | 1020 | 2011 |
| A systematic investigation into the nature of tryptic HCD spectra A Michalski, N Neuhauser, J Cox, M Mann Journal of proteome research 11 (11), 5479-5491, 2012 | 131 | 2012 |
| Accurate and automated high-coverage identification of chemically cross-linked peptides with MaxLynx S Yılmaz, F Busch, N Nagaraj, J Cox Analytical Chemistry 94 (3), 1608-1617, 2022 | 27 | 2022 |
| Accurate proteome-wide label-free quantification by delayed normalization and maximal peptide ratio extraction, termed MaxLFQ J Cox, MY Hein, CA Luber, I Paron, N Nagaraj, M Mann Molecular & cellular proteomics 13 (9), 2513-2526, 2014 | 4750 | 2014 |
| Acetylation site specificities of lysine deacetylase inhibitors in human cells C Schölz, BT Weinert, SA Wagner, P Beli, Y Miyake, J Qi, LJ Jensen, ... Nature biotechnology 33 (4), 415-423, 2015 | 279 | 2015 |
| Advanced Computational Methods Drive Large-Scale Data Analysis in 4D-Proteomics: MaxQuant software enables high-throughput proteomics by streamlining the analysis of raw data J Cox, G Kruppa Genetic Engineering & Biotechnology News 40 (12), 22-23, 2020 | 1 | 2020 |