| A fast, lock-free approach for efficient parallel counting of occurrences of k-mers G Marçais, C Kingsford Bioinformatics 27 (6), 764-770, 2011 | 3586 | 2011 |
| A new rhesus macaque assembly and annotation for next-generation sequencing analyses AV Zimin, AS Cornish, MD Maudhoo, RM Gibbs, X Zhang, S Pandey, ... Biology direct 9 (1), 20, 2014 | 188 | 2014 |
| A synthesis for exactly 3-edge-connected graphs C Kingsford, G Marçais arXiv preprint arXiv:0905.1053, 2009 | 3 | 2009 |
| A whole-genome assembly of the domestic cow, Bos taurus AV Zimin, AL Delcher, L Florea, DR Kelley, MC Schatz, D Puiu, ... Genome biology 10 (4), R42, 2009 | 1373 | 2009 |
| Assembly Improvements to Move Beyond Loblolly Pine Assembly v1. 0 A Zimin, G Marcais, D Puiu, K Stevens, M Roberts, S Salzberg, J Yorke Plant and Animal Genome XXII Conference, 2014 | | 2014 |
| Asymptotically optimal minimizers schemes G Marçais, D DeBlasio, C Kingsford Bioinformatics 34 (13), i13-i22, 2018 | 47 | 2018 |
| Compact Universal k-mer Hitting Sets Y Orenstein, D Pellow, G Marçais, R Shamir, C Kingsford International Workshop on Algorithms in Bioinformatics, 257-268, 2016 | 28 | 2016 |
| Creating and using minimizer sketches in computational genomics H Zheng, G Marçais, C Kingsford Journal of Computational Biology 30 (12), 1251-1276, 2023 | 10 | 2023 |
| Decoding the massive genome of loblolly pine using haploid DNA and novel assembly strategies DB Neale, JL Wegrzyn, KA Stevens, AV Zimin, D Puiu, MW Crepeau, ... Genome Biology 15 (3), R59, 2014 | 552 | 2014 |
| Density and Conservation Optimization of the Generalized Masked-Minimizer Sketching Scheme M Hoang, G Marçais, C Kingsford Journal of Computational Biology 31 (1), 2-20, 2024 | | 2024 |
| Designing small universal k-mer hitting sets for improved analysis of high-throughput sequencing. Y Orenstein, D Pellow, G Marçais, R Shamir, C Kingsford PLoS computational biology 13 (10), e1005777, 2017 | 49 | 2017 |
| GAGE: A critical evaluation of genome assemblies and assembly algorithms SL Salzberg, AM Phillippy, A Zimin, D Puiu, T Magoc, S Koren, ... Genome research 22 (3), 557-567, 2012 | 887 | 2012 |
| GAGE: A critical evaluation of genome assemblies and assembly algorithms SL Salzberg, AM Phillippy, A Zimin, D Puiu, T Magoc, S Koren, ... Genome research 22 (3), 557-567, 2012 | 887 | 2012 |
| Generalization of the minimizers schemes G Marçais, D DeBlasio, C Kingsford Plant and Animal Genome XXVII Conference (January 12-16, 2019), 2019 | | 2019 |
| Genome assembly techniques G Marcais University of Maryland, College Park, 2011 | 1 | 2011 |
| Harvestman: A framework for hierarchical feature learning and selection from whole genome sequencing data TS Frisby, SJ Baker, G Marçais, QM Hoang, C Kingsford, CJ Langmead BMC bioinformatics 22 (1), 1-19, 2021 | 3 | 2021 |
| Hybrid assembly of the large and highly repetitive genome of Aegilops tauschii, a progenitor of bread wheat, with the MaSuRCA mega-reads algorithm AV Zimin, D Puiu, MC Luo, T Zhu, S Koren, G Marçais, JA Yorke, J Dvořák, ... Genome Research 27 (5), 787-792, 2017 | 404 | 2017 |
| Improved design and analysis of practical minimizers H Zheng, C Kingsford, G Marçais Bioinformatics 36 (Supplement_1), i119-i127, 2020 | 45 | 2020 |
| Improving the performance of minimizers and winnowing schemes G Marçais, D Pellow, D Bork, Y Orenstein, R Shamir, C Kingsford Bioinformatics 33 (14), i110-i117, 2017 | 69 | 2017 |
| Jellyfish: A fast k-mer counter G Marcais, C Kingsford | 64 | 2012 |
