Juan Antonio Vizcaino

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Henning HermjakobHead of Molecular Systems, European Bioinformatics Institute (EMBL-EBI)Verified email at ebi.ac.uk
Yasset Perez-RiverolTeam Coordinator, Proteomics Resources, EMBL-EBI, UKVerified email at ebi.ac.uk
Eric DeutschInstitute for Systems BiologyVerified email at systemsbiology.org
Johannes GrissPostDoc, EMBL-European Biofinformatics InstitueVerified email at ebi.ac.uk
Attila CsordasAgeCurve LimitedVerified email at agecurve.co.uk
Martin EisenacherMedizinische Bioinformatik, Medizinisches Proteom-Center, Ruhr-University BochumVerified email at rub.de
Andrew JonesDepartment of Biochemistry and Systems Biology, ISMIB, University of LiverpoolVerified email at liverpool.ac.uk
Lennart MartensSenior Full Professor of Systems Biology, Ghent University and VIB, Ghent, BelgiumVerified email at UGent.be
Gerhard MayerHeidelberger Institut für theoretische Studien (HITS) gGmbHVerified email at h-its.org
Andrew F. JarnuczakEuropean Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI)Verified email at ebi.ac.uk
Pierre-Alain BinzHead of laboratory, Clinical chemistry laboratory, CHUVVerified email at chuv.ch
Richard CoteEuropean Bioinformatics InstituteVerified email at ebi.ac.uk
Deepti Jaiswal KunduEMBL-EBI European Bioinformatics InstituteVerified email at ebi.ac.uk
Julian UszkoreitMedical Bioinformatics, Ruhr University BochumVerified email at rub.de
Jose A DianesEMBL - European Bioinformatics InstituteVerified email at chronomics.com
Alvis BrazmaSenior Scientist, European Bioinformatics Institute, EMBLVerified email at ebi.ac.uk
ENRIQUE MONTEUniversidad de SalamancaVerified email at usal.es
Timo SachsenbergStaff Scientist, University of TübingenVerified email at uni-tuebingen.de
Zhi SunInstitute for Systems BiologyVerified email at systemsbiology.org
Suresh HewapathiranaEuropean Bioinformatics Institute (EMBL-EBI)Verified email at ebi.ac.uk

Juan Antonio Vizcaino

Proteomics Team Leader, EMBL-EBI

Verified email at ebi.ac.uk - Homepage

computational proteomics mass spectrometry bioinformatics


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< i> ThPTR2</i>, a di/tri-peptide transporter gene from< i> Trichoderma harzianum</i> JA Vizcaíno, RE Cardoza, M Hauser, R Hermosa, M Rey, A Llobell, ... Fungal Genetics and Biology 43 (4), 234-246, 2006	50	2006
2016 update of the PRIDE database and its related tools JA Vizcaíno, A Csordas, N Del-Toro, JA Dianes, J Griss, I Lavidas, ... Nucleic acids research 44 (D1), D447-D456, 2016	3767	2016
A community proposal to integrate proteomics activities in JA Vizcaíno, M Walzer, RC Jiménez, W Bittremieux, D Bouyssié, ...
A community proposal to integrate proteomics activities in ELIXIR JA Vizcaíno, M Walzer, RC Jiménez, W Bittremieux, D Bouyssié, ... F1000Research 6, 2017	12	2017
A comparison of the phenotypic and genetic stability of recombinant Trichoderma spp. generated by protoplast-and Agrobacterium-mediated transformation RE Cardoza, JA Vizcaino, MR Hermosa, E Monte, S Gutierrez Journal of Microbiology 44 (4), 383-395, 2006	83	2006
A five-level classification system for proteoform identifications LM Smith, PM Thomas, MR Shortreed, LV Schaffer, RT Fellers, RD LeDuc, ... Nature methods 16 (10), 939-940, 2019	68	2019
A golden age for working with public proteomics data L Martens, JA Vizcaíno Trends in biochemical sciences 42 (5), 333-341, 2017	98	2017
A guide to the Proteomics Identifications Database proteomics data repository JA Vizcaíno, R Côté, F Reisinger, J M Foster, M Mueller, J Rameseder, ... Proteomics 9 (18), 4276-4283, 2009	277	2009
A high-stringency blueprint of the human proteome S Adhikari, EC Nice, EW Deutsch, L Lane, GS Omenn, SR Pennington, ... Nature communications 11 (1), 5301, 2020	190	2020
A HUPO test sample study reveals common problems in mass spectrometry–based proteomics AW Bell, EW Deutsch, CE Au, RE Kearney, R Beavis, S Sechi, T Nilsson, ... Nature methods 6 (6), 423-430, 2009	405	2009
A proteomics sample metadata representation for multiomics integration and big data analysis C Dai, A Füllgrabe, J Pfeuffer, EM Solovyeva, J Deng, P Moreno, ... Nature Communications 12 (1), 5854, 2021	59	2021
A public repository for mass spectrometry imaging data A Römpp, R Wang, JP Albar, A Urbani, H Hermjakob, B Spengler, ... Analytical and bioanalytical chemistry 407, 2027-2033, 2015	34	2015
A standardized framing for reporting protein identifications in mzIdentML 1.2 SL Seymour, T Farrah, PA Binz, RJ Chalkley, JS Cottrell, BC Searle, ... Proteomics 14 (21-22), 2389-2399, 2014	23	2014
A survey of molecular descriptors used in mass spectrometry based proteomics E Audain, A Sanchez, J Antonio Vizcaíno, Y Perez-Riverol Current topics in medicinal chemistry 14 (3), 388-397, 2014	7	2014
Accurate and fast feature selection workflow for high-dimensional omics data Y Perez-Riverol, M Kuhn, JA Vizcaíno, MP Hitz, E Audain PloS one 12 (12), e0189875, 2017	86	2017
An application of latent topic document analysis to large-scale proteomics databases S Klie, L Martens, JA Vizcaino, R Cote, P Jones, R Apweiler, A Hinneburg, ... Gesellschaft für Informatik e. V., 2007	2	2007
An integrated landscape of protein expression in human cancer AF Jarnuczak, H Najgebauer, M Barzine, DJ Kundu, F Ghavidel, ... Scientific data 8 (1), 115, 2021	49	2021
Analysing latent topics in large-scale proteomics databases S Klie, A Hinneburg, L Martens, JA Vizcaino, R Cote, P Jones, R Apweiler, ... LWA 2007 Lernen–Wissen–Adaption, 73, 0
Analysis of the experimental detection of central nervous system‐related genes in human brain and cerebrospinal fluid datasets M Mueller, JA Vizcaíno, P Jones, R Côté, D Thorneycroft, R Apweiler, ... Proteomics 8 (6), 1138-1148, 2008	21	2008
Analysis of the protein domain and domain architecture content in fungi and its application in the search of new antifungal targets A Barrera, A Alastruey-Izquierdo, MJ Martín, I Cuesta, JA Vizcaíno PLoS computational biology 10 (7), e1003733, 2014	30	2014

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