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Kate Rosenbloom
Kate Rosenbloom
UC Santa Cruz Genomics Institute, UCSC Genome Browser
Verified email at soe.ucsc.edu
Title
Cited by
Year
28-way vertebrate alignment and conservation track in the UCSC Genome Browser
W Miller, K Rosenbloom, RC Hardison, M Hou, J Taylor, B Raney, ...
Genome research 17 (12), 1797-1808, 2007
3202007
A comparative encyclopedia of DNA elements in the mouse genome
F Yue, Y Cheng, A Breschi, J Vierstra, W Wu, T Ryba, R Sandstrom, Z Ma, ...
Nature 515 (7527), 355-364, 2014
19362014
A quantitative proteome map of the human body
L Jiang, M Wang, S Lin, R Jian, X Li, J Chan, G Dong, H Fang, ...
Cell 183 (1), 269-283. e19, 2020
3102020
A user's guide to the encyclopedia of DNA elements (ENCODE)
RM Myers, J Stamatoyannopoulos, M Snyder, I Dunham, RC Hardison, ...
PLoS biology 9 (4), 2011
6772011
Additional Materials and Methods
RM Kuhn, D Karolchik, AS Zweig, T Wang, KE Smith, KR Rosenbloom, ...
Aligning multiple genomic sequences with the threaded blockset aligner
M Blanchette, WJ Kent, C Riemer, L Elnitski, AFA Smit, KM Roskin, ...
Genome research 14 (4), 708-715, 2004
21652004
An encyclopedia of mouse DNA elements (Mouse ENCODE)
EC Mouse, JA Stamatoyannopoulos, M Snyder, R Hardison, B Ren, ...
Genome Biol 13 (8), 418, 2012
1482012
An encyclopedia of mouse DNA elements (Mouse ENCODE)
Mouse ENCODE Consortium, JA Stamatoyannopoulos, M Snyder, ...
Genome biology 13, 1-5, 2012
3712012
An integrated encyclopedia of DNA elements in the human genome
I Dunham, A Kundaje, SF Aldred, PJ Collins, CA Davis, F Doyle, ...
Nature 489 (7414), 57-74, 2012
682012
An integrated encyclopedia of DNA elements in the human genome
ENCODE Project Consortium Overall coordination (data analysis coordination ...
Nature 489 (7414), 57-74, 2012
22012
An integrated encyclopedia of DNA elements in the human genome
ENCODE Project Consortium
Nature 489 (7414), 57, 2012
168792012
Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome
EH Margulies, GM Cooper, G Asimenos, DJ Thomas, CN Dewey, A Siepel, ...
Genome research 17 (6), 760-774, 2007
2522007
Co-expression networks reveal the tissue-specific regulation of transcription and splicing
A Saha, Y Kim, ADH Gewirtz, B Jo, C Gao, IC McDowell, BE Engelhardt, ...
Genome research 27 (11), 1843-1858, 2017
1722017
Comparative genomic analysis using the UCSC genome browser
D Karolchik, G Bejerano, AS Hinrichs, RM Kuhn, W Miller, ...
Comparative Genomics, 17-33, 2008
322008
Detection of nonneutral substitution rates on mammalian phylogenies
KS Pollard, MJ Hubisz, KR Rosenbloom, A Siepel
Genome research 20 (1), 110-121, 2010
26962010
Dynamic landscape and regulation of RNA editing in mammals
MH Tan, Q Li, R Shanmugam, R Piskol, J Kohler, AN Young, KI Liu, ...
Nature 550 (7675), 249-254, 2017
5542017
ENCODE data in the UCSC Genome Browser: year 5 update
KR Rosenbloom, CA Sloan, VS Malladi, TR Dreszer, K Learned, ...
Nucleic acids research 41 (D1), D56-D63, 2012
8912012
ENCODE Project at UCSC
K Rosenbloom, T Dreszer, V Malladi, J Long, C Sloan, B Raney, M Cline, ...
ENCODE whole-genome data in the UCSC genome browser (2011 update)
BJ Raney, MS Cline, KR Rosenbloom, TR Dreszer, K Learned, GP Barber, ...
Nucleic acids research 39 (suppl_1), D871-D875, 2011
2432011
ENCODE whole-genome data in the UCSC Genome Browser: update 2012
KR Rosenbloom, TR Dreszer, JC Long, VS Malladi, CA Sloan, BJ Raney, ...
Nucleic acids research 40 (D1), D912-D917, 2012
613*2012
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