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Mario dos Reis
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A Beginner's Guide to Estimating the Non-synonymous to Synonymous Rate Ratio of all Protein-Coding Genes in a Genome
DC Jeffares, B Tomiczek, V Sojo, M dos Reis
Parasite Genomics Protocols, 65-90, 2015
1522015
A biologist’s guide to Bayesian phylogenetic analysis
FF Nascimento, M dos Reis, Z Yang
Nature ecology & evolution 1 (10), 1446-1454, 2017
2042017
A Mutation–Selection Model of Protein Evolution under Persistent Positive Selection
AU Tamuri, M Dos Reis
Molecular biology and evolution 39 (1), msab309, 2022
122022
A penalized-likelihood method to estimate the distribution of selection coefficients from phylogenetic data
AU Tamuri, N Goldman, M dos Reis
Genetics 197 (1), 257-271, 2014
602014
A species-level timeline of mammal evolution integrating phylogenomic data
S Álvarez-Carretero, AU Tamuri, M Battini, FF Nascimento, E Carlisle, ...
Nature 602 (7896), 263-267, 2022
1062022
A Step-by-Step Tutorial: Divergence Time Estimation with Approximate Likelihood Calculation Using MCMCTREE in PAML
J Inoue, M dos Reis, Z Yang
72011
An evaluation of different partitioning strategies for Bayesian estimation of species divergence times
K Angelis, S Álvarez-Carretero, M dos Reis, Z Yang
Systematic Biology, 2017
372017
An exceptionally high nucleotide and haplotype diversity and a signature of positive selection for the eIF4E resistance gene in barley are revealed by allele mining and …
BJ HOFINGER, JR RUSSELL, CG BASS, T BALDWIN, M dos REIS, ...
Molecular Ecology 20 (17), 3653-3668, 2011
652011
Analysis of the Albumin/α-Fetoprotein/Afamin/Group specific component gene family in the context of zebrafish liver differentiation
ES Noël, M dos Reis, Z Arain, EA Ober
Gene Expression Patterns 10 (6), 237-243, 2010
732010
Approximate Likelihood Calculation on a Phylogeny for Bayesian Estimation of Divergence Times
M dos Reis, Z Yang
Molecular Biology and Evolution 28 (7), 2161-2172, 2011
2902011
Archaeology and evolution of transfer RNA genes in the Escherichia coli genome
M Withers, L Wernisch, M dos Reis
Rna 12 (6), 933-942, 2006
662006
Bayesian estimation of nonsynonymous/synonymous rate ratios for pairwise sequence comparisons
K Angelis, M dos Reis, Z Yang
Molecular biology and evolution 31 (7), 1902-1913, 2014
172014
Bayesian Estimation of Species Divergence Times Using Correlated Quantitative Characters
S Alvarez-Carretero, A Goswami, Z Yang, M dos Reis
Systematic Biology, 2019
372019
Bayesian molecular clock dating of species divergences in the genomics era
M dos Reis, PCJ Donoghue, Z Yang
Nature Reviews Genetics 17 (2), 71-80, 2016
2872016
Bayesian molecular clock dating using genome-scale datasets
M Dos Reis, Z Yang
Evolutionary genomics: Statistical and computational methods, 309-330, 2019
472019
Bayesian Phylogenomic Dating
S Álvarez-Carretero, M dos Reis
The Molecular Evolutionary Clock, 221-249, 2020
42020
Bayesian Selection of Relaxed-clock Models: Distinguishing Between Independent and Autocorrelated Rates
M Panchaksaram, L Freitas, M dos Reis
bioRxiv, 2024.04. 10.588547, 2024
2024
Characterization of the uncertainty of divergence time estimation under relaxed molecular clock models using multiple loci
T Zhu, M dos Reis, Z Yang
Systematic biology 64 (2), 267-280, 2014
792014
Charting the host adaptation of influenza viruses
M dos Reis, AU Tamuri, AJ Hay, RA Goldstein
Molecular biology and evolution 28 (6), 1755-1767, 2011
382011
Churchill, a zinc finger transcriptional activator, regulates the transition between gastrulation and neurulation
G Sheng, M dos Reis, CD Stern
Cell 115 (5), 603-613, 2003
2172003
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