Articles with public access mandates - Andreas WilkeLearn more
Available somewhere: 19
The RAST Server: rapid annotations using subsystems technology
RK Aziz, D Bartels, AA Best, M DeJongh, T Disz, RA Edwards, K Formsma, ...
BMC genomics 9, 1-15, 2008
Mandates: US National Institutes of Health
The metagenomics RAST server–a public resource for the automatic phylogenetic and functional analysis of metagenomes
F Meyer, D Paarmann, M D'Souza, R Olson, EM Glass, M Kubal, ...
BMC bioinformatics 9, 1-8, 2008
Mandates: US National Institutes of Health
The Biological Observation Matrix (BIOM) format or: how I learned to stop worrying and love the ome-ome
D McDonald, JC Clemente, J Kuczynski, JR Rideout, J Stombaugh, ...
Gigascience 1 (1), 2047-217X-1-7, 2012
Mandates: US National Institutes of Health, Howard Hughes Medical Institute
Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications
P Yilmaz, R Kottmann, D Field, R Knight, JR Cole, L Amaral-Zettler, ...
Nature biotechnology 29 (5), 415-420, 2011
Mandates: US National Institutes of Health, Howard Hughes Medical Institute
Red death in Caenorhabditis elegans caused by Pseudomonas aeruginosa PAO1
A Zaborin, K Romanowski, S Gerdes, C Holbrook, F Lepine, J Long, ...
Proceedings of the National Academy of Sciences 106 (15), 6327-6332, 2009
Mandates: US National Institutes of Health
The MG-RAST metagenomics database and portal in 2015
A Wilke, J Bischof, W Gerlach, E Glass, T Harrison, KP Keegan, T Paczian, ...
Nucleic acids research 44 (D1), D590-D594, 2016
Mandates: US Department of Energy, US National Institutes of Health
MG-RAST version 4—lessons learned from a decade of low-budget ultra-high-throughput metagenome analysis
F Meyer, S Bagchi, S Chaterji, W Gerlach, A Grama, T Harrison, T Paczian, ...
Briefings in bioinformatics 20 (4), 1151-1159, 2019
Mandates: US National Science Foundation, US Department of Energy, US National …
Skyport-container-based execution environment management for multi-cloud scientific workflows
W Gerlach, W Tang, K Keegan, T Harrison, A Wilke, J Bischof, M D'Souza, ...
2014 5th International Workshop on Data-Intensive Computing in the Clouds, 25-32, 2014
Mandates: US Department of Energy, US National Institutes of Health
Using clouds for metagenomics: a case study
J Wilkening, A Wilke, N Desai, F Meyer
2009 IEEE International Conference on Cluster Computing and Workshops, 1-6, 2009
Mandates: US National Institutes of Health
A RESTful API for accessing microbial community data for MG-RAST
A Wilke, J Bischof, T Harrison, T Brettin, M D'Souza, W Gerlach, ...
PLoS Computational Biology 11 (1), e1004008, 2015
Mandates: US Department of Energy, US National Institutes of Health
The complete genome sequence for putative H2‐ and S‐oxidizer Candidatus Sulfuricurvum sp., assembled de novo from an aquifer‐derived metagenome
KM Handley, D Bartels, EJ O'Loughlin, KH Williams, WL Trimble, ...
Environmental microbiology 16 (11), 3443-3462, 2014
Mandates: US Department of Energy
Short-read reading-frame predictors are not created equal: sequence error causes loss of signal
WL Trimble, KP Keegan, M D’Souza, A Wilke, J Wilkening, J Gilbert, ...
BMC bioinformatics 13, 1-10, 2012
Mandates: US National Institutes of Health
Connecting genotype to phenotype in the era of high-throughput sequencing
CS Henry, R Overbeek, F Xia, AA Best, E Glass, J Gilbert, P Larsen, ...
Biochimica et Biophysica Acta (BBA)-General Subjects 1810 (10), 967-977, 2011
Mandates: US National Institutes of Health
Container orchestration for scientific workflows
W Gerlach, W Tang, A Wilke, D Olson, F Meyer
2015 IEEE International conference on cloud engineering, 377-378, 2015
Mandates: US Department of Energy, US National Institutes of Health
A metagenomics portal for a democratized sequencing world.
A Wilke, EM Glass, D Bartels, J Bischof, D Braithwaite, M D'Souza, ...
Methods in enzymology 531, 487-523, 2012
Mandates: US National Institutes of Health
Workload characterization for MG-RAST metagenomic data analytics service in the cloud
W Tang, J Bischof, N Desai, K Mahadik, W Gerlach, T Harrison, A Wilke, ...
2014 IEEE International Conference on Big Data (Big Data), 56-63, 2014
Mandates: US Department of Energy, US National Institutes of Health
The MG-RAST API explorer: an on-ramp for RESTful query composition
T Paczian, WL Trimble, W Gerlach, T Harrison, A Wilke, F Meyer
BMC bioinformatics 20, 1-8, 2019
Mandates: US National Science Foundation, US Department of Energy, US National …
Shock: active storage for multicloud streaming data analysis
J Bischof, A Wilke, W Gerlach, T Harrison, T Paczian, W Tang, W Trimble, ...
2015 IEEE/ACM 2nd International Symposium on Big Data Computing (BDC), 68-72, 2015
Mandates: US Department of Energy, US National Institutes of Health
Metazen–metadata capture for metagenomes
J Bischof, T Harrison, T Paczian, E Glass, A Wilke, F Meyer
Standards in Genomic Sciences 9, 1-6, 2014
Mandates: US Department of Energy
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