PTMProphet: Fast and accurate mass modification localization for the trans-proteomic pipeline DD Shteynberg, EW Deutsch, DS Campbell, MR Hoopmann, ... Journal of proteome research 18 (12), 4262-4272, 2019 | 100 | 2019 |
Characterizing virulence-specific perturbations in the mitochondrial function of macrophages infected with mycobacterium tuberculosis S Jamwal, MK Midha, HN Verma, A Basu, KVS Rao, V Manivel Scientific reports 3 (1), 1328, 2013 | 94 | 2013 |
DIALib-QC an assessment tool for spectral libraries in data-independent acquisition proteomics MK Midha, DS Campbell, C Kapil, U Kusebauch, MR Hoopmann, ... Nature Communications 11 (1), 5251, 2020 | 39 | 2020 |
A comprehensive spectral assay library to quantify the Escherichia coli proteome by DIA/SWATH-MS MK Midha, U Kusebauch, D Shteynberg, C Kapil, SL Bader, PJ Reddy, ... Scientific data 7 (1), 389, 2020 | 38 | 2020 |
Defining the Akt1 interactome and its role in regulating the cell cycle S Duggal, N Jailkhani, MK Midha, N Agrawal, KVS Rao, A Kumar Scientific reports 8 (1), 1303, 2018 | 35 | 2018 |
Selective enrichment of mycobacterial proteins from infected host macrophages AG Chande, Z Siddiqui, MK Midha, V Sirohi, S Ravichandran, KVS Rao Scientific reports 5 (1), 1-15, 2015 | 27 | 2015 |
Quantitative Proteomics and Lipidomics Analysis of Endoplasmic Reticulum of Macrophage Infected with Mycobacterium tuberculosis NM Saquib, S Jamwal, MK Midha, HN Verma, V Manivel International journal of proteomics 2015 (1), 270438, 2015 | 20 | 2015 |
Lung proteomic biomarkers associated with chronic obstructive pulmonary disease YH Zhang, MR Hoopmann, PJ Castaldi, KA Simonsen, MK Midha, ... American Journal of Physiology-Lung Cellular and Molecular Physiology 321 (6 …, 2021 | 19 | 2021 |
Dataset generated using hyperplexing and click chemistry to monitor temporal dynamics of newly synthesized macrophage secretome post infection by mycobacterial strains A Kumar, S Jamwal, MK Midha, B Hamza, S Aggarwal, AK Yadav, ... Data in brief 9, 349-354, 2016 | 16 | 2016 |
A primary human T-cell spectral library to facilitate large scale quantitative T-cell proteomics H Weerakoon, J Potriquet, AK Shah, S Reed, B Jayakody, C Kapil, ... Scientific data 7 (1), 412, 2020 | 14 | 2020 |
Extracting time-dependent obese-diabetic specific networks in hepatic proteome analysis MK Midha, K Tikoo, N Sinha, S Kaur, HN Verma, KVS Rao, S Chatterjee, ... Journal of proteome research 11 (12), 6030-6043, 2012 | 10 | 2012 |
Lifespan-extending interventions induce consistent patterns of fatty acid oxidation in mouse livers K Watanabe, T Wilmanski, P Baloni, M Robinson, GG Garcia, ... Communications Biology 6 (1), 768, 2023 | 9 | 2023 |
HyperQuant—a computational pipeline for higher order multiplexed quantitative proteomics S Aggarwal, A Kumar, S Jamwal, MK Midha, NC Talukdar, AK Yadav ACS omega 5 (19), 10857-10867, 2020 | 7 | 2020 |
Integrating genetics, transcriptomics, and proteomics in lung tissue to investigate chronic obstructive pulmonary disease YH Zhang, MH Cho, JD Morrow, PJ Castaldi, CP Hersh, MK Midha, ... American journal of respiratory cell and molecular biology 68 (6), 651-663, 2023 | 6 | 2023 |
Vacuum Insulated Probe Heated ElectroSpray Ionization source (VIP-HESI) enhances micro flow rate chromatography signals in the Bruker timsTOF mass spectrometer MK Midha, C Kapil, M Maes, DH Baxter, SR Morrone, TJ Prokop, ... bioRxiv, 2023 | 4 | 2023 |
Proteomic changes induced by longevity-promoting interventions in mice AR Burns, J Wiedrick, A Feryn, M Maes, MK Midha, DH Baxter, ... Geroscience 46 (2), 1543-1560, 2024 | 3 | 2024 |
Vacuum insulated probe heated electrospray ionization source enhances microflow rate chromatography signals in the Bruker timsTOF mass spectrometer MK Midha, C Kapil, M Maes, DH Baxter, SR Morrone, TJ Prokop, ... Journal of proteome research 22 (7), 2525-2537, 2023 | 3 | 2023 |
THP1 proteomics in response to mycobacterium tuberculosis infection A Kumar, MK Midha, KVS Rao Data in Brief 35, 106803, 2021 | 3 | 2021 |
2019 Association of Biomolecular Resource Facilities Multi-Laboratory Data-Independent Acquisition Study BA Neely, PM Stemmer, BC Searle, LE Herring, LR Martin, MK Midha, ... bioRxiv, 2020.11. 20.391300, 2020 | 3 | 2020 |
Data Independent Acquisition in Practice: Foundations and Resources for Implementing DIA B Neely, J Kirkpatrick, M Midha, P Stemmer, LR Martin, Y Wang, L Herring, ... Journal of Biomolecular Techniques: JBT 30 (Suppl), S46, 2019 | 3 | 2019 |