Articles with public access mandates - Matthew Brian CougerLearn more
Not available anywhere: 1
A 50K SNP array reveals genetic structure for bald eagles (Haliaeetus leucocephalus)
ME Judkins, BM Couger, WC Warren, RA Van Den Bussche
Conservation Genetics 21, 65-76, 2020
Mandates: Ford Foundation
Available somewhere: 30
De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis
BJ Haas, A Papanicolaou, M Yassour, M Grabherr, PD Blood, J Bowden, ...
Nature protocols 8 (8), 1494-1512, 2013
Mandates: US National Institutes of Health, Howard Hughes Medical Institute, Research …
A tissue-mapped axolotl de novo transcriptome enables identification of limb regeneration factors
DM Bryant, K Johnson, T DiTommaso, T Tickle, MB Couger, ...
Cell reports 18 (3), 762-776, 2017
Mandates: US National Institutes of Health, Howard Hughes Medical Institute
Horizontal gene transfer as an indispensable driver for evolution of Neocallimastigomycota into a distinct gut-dwelling fungal lineage
CL Murphy, NH Youssef, RA Hanafy, MB Couger, JE Stajich, Y Wang, ...
Applied and environmental microbiology 85 (15), e00988-19, 2019
Mandates: US National Science Foundation
Genome Analysis of Staphylococcus agnetis, an Agent of Lameness in Broiler Chickens
AAK Al-Rubaye, MB Couger, S Ojha, JF Pummill, JA Koon, ...
PloS one 10 (11), e0143336, 2015
Mandates: US National Institutes of Health
Molecular Dating of the Emergence of Anaerobic Rumen Fungi and the Impact of Laterally Acquired Genes
JES Yan Wang, Noha H. Youssef, Matthew Brian Couger, Radwa A. Hanafy ...
mSystems 4 (4), 2019
Mandates: US National Science Foundation, US National Institutes of Health, US …
Myceliophthora thermophila M77 utilizes hydrolytic and oxidative mechanisms to deconstruct biomass
HB Dos Santos, TMS Bezerra, JGC Pradella, P Delabona, D Lima, ...
Amb Express 6, 1-12, 2016
Mandates: US Department of Energy
Research resource: the dexamethasone transcriptome in hypothalamic embryonic neural stem cells
KA Frahm, ME Peffer, JY Zhang, S Luthra, AB Chakka, MB Couger, ...
Molecular Endocrinology 30 (1), 144-154, 2016
Mandates: US National Institutes of Health
Development of an RNA interference (RNAi) gene knockdown protocol in the anaerobic gut fungus Pecoramyces ruminantium strain C1A
SS Calkins, NC Elledge, KE Mueller, SM Marek, MB Couger, ...
PeerJ 6, e4276, 2018
Mandates: US National Science Foundation
Nanopore ultra-long read sequencing technology for antimicrobial resistance detection in Mannheimia haemolytica
A Lim, B Naidenov, H Bates, K Willyerd, T Snider, MB Couger, C Chen, ...
Journal of microbiological methods 159, 138-147, 2019
Mandates: US National Science Foundation, US Department of Agriculture
Sex chromosome transformation and the origin of a male-specific X chromosome in the creeping vole
MB Couger, SW Roy, N Anderson, L Gozashti, S Pirro, LS Millward, M Kim, ...
Science 372 (6542), 592-600, 2021
Mandates: US National Science Foundation, US National Institutes of Health
Draft genome sequence of Microbacterium oleivorans strain Wellendorf implicates heterotrophic versatility and bioremediation potential
AP Avramov, MB Couger, EL Hartley, C Land, R Wellendorf, RA Hanafy, ...
Genomics Data 10, 54-60, 2016
Mandates: US National Science Foundation, Howard Hughes Medical Institute
Draft genome sequence of Pseudomonas moraviensis strain Devor implicates metabolic versatility and bioremediation potential
NT Miller, D Fuller, MB Couger, M Bagazinski, P Boyne, RC Devor, ...
Genomics Data 9, 154-159, 2016
Mandates: US National Science Foundation, Howard Hughes Medical Institute
Draft genome sequence of Micrococcus luteus strain O'Kane implicates metabolic versatility and the potential to degrade polyhydroxybutyrates
RA Hanafy, MB Couger, K Baker, C Murphy, SD O'Kane, C Budd, ...
Genomics Data 9, 148-153, 2016
Mandates: US National Science Foundation, Howard Hughes Medical Institute
Enabling large-scale next-generation sequence assembly with Blacklight
MB Couger, L Pipes, PD Blood, CE Mason
Proceedings of the Conference on Extreme Science and Engineering Discovery …, 2013
Mandates: US National Institutes of Health
Proteomic and bioinformatic analyses of putative Mannheimia haemolytica secretome by liquid chromatography and tandem mass spectrometry
S Ayalew, AW Confer, SD Hartson, PJ Canaan, M Payton, B Couger
Veterinary microbiology 203, 73-80, 2017
Mandates: US Department of Agriculture
Draft genome sequence and detailed analysis of Pantoea eucrina strain Russ and implication for opportunistic pathogenesis
F Moghadam, MB Couger, B Russ, R Ramsey, RA Hanafy, C Budd, ...
Genomics data 10, 63-68, 2016
Mandates: US National Science Foundation, Howard Hughes Medical Institute
Gene-rich X chromosomes implicate intragenomic conflict in the evolution of bizarre genetic systems
N Anderson, KS Jaron, CN Hodson, MB Couger, J Ševčík, B Weinstein, ...
Proceedings of the National Academy of Sciences 119 (23), e2122580119, 2022
Mandates: US National Science Foundation, Natural Sciences and Engineering Research …
Comparative genomics and divergence time estimation of the anaerobic fungi in herbivorous mammals
Y Wang, N Youssef, M Couger, R Hanafy, M Elshahed, JE Stajich
bioRxiv, 2019
Mandates: US National Science Foundation, US National Institutes of Health
A High Quality Genome for Mus spicilegus, a Close Relative of House Mice with Unique Social and Ecological Adaptations
MB Couger, L Arévalo, P Campbell
G3: Genes, Genomes, Genetics 8 (7), 2145-2152, 2018
Mandates: US National Science Foundation
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