Articles with public access mandates - Uwe OhlerLearn more
OverallNIHDFGBMBFEuropean CommissionHelmholtzHHMINSFHFSPMRCUSDACIHRNSERCEMBLWellcomeFWOGovernment of SpainLeducq Foundation, USADoDHRBSFIBBSRCKWFAIRC Foundation for Cancer Research in ItalyCZIDOESNSFNASAARCFRQSNWOBHFNIHRDoris Duke Charitable FoundationANRAlex's Lemonade StandMelanoma Research Alliance
Not available anywhere: 3
Beyond read-counts: Ribo-seq data analysis to understand the functions of the transcriptome
L Calviello, U Ohler
Trends in Genetics 33 (10), 728-744, 2017
Mandates: Federal Ministry of Education and Research, Germany
Intricacies of single-cell multi-omics data integration
P Rautenstrauch, AHC Vlot, S Saran, U Ohler
Trends in Genetics 38 (2), 128-139, 2022
Mandates: German Research Foundation, Helmholtz Association, Federal Ministry of …
Genome-wide analysis of actively translated open reading frames using RiboTaper/ORFquant
D Harnett, E Meerdink, L Calviello, D Sydow, U Ohler
Ribosome Profiling: Methods and Protocols, 331-346, 2021
Mandates: German Research Foundation, Federal Ministry of Education and Research, Germany
Available somewhere: 109
Severe COVID-19 is marked by a dysregulated myeloid cell compartment
J Schulte-Schrepping, N Reusch, D Paclik, K Baßler, S Schlickeiser, ...
Cell 182 (6), 1419-1440. e23, 2020
Mandates: German Research Foundation, Helmholtz Association, Federal Ministry of …
A high-resolution root spatiotemporal map reveals dominant expression patterns
SM Brady, DA Orlando, JY Lee, JY Wang, J Koch, JR Dinneny, D Mace, ...
Science 318 (5851), 801-806, 2007
Mandates: Swiss National Science Foundation
FMRP targets distinct mRNA sequence elements to regulate protein expression
M Ascano, N Mukherjee, P Bandaru, JB Miller, JD Nusbaum, DL Corcoran, ...
Nature 492 (7429), 382-386, 2012
Mandates: US National Institutes of Health, Howard Hughes Medical Institute
Integrative regulatory mapping indicates that the RNA-binding protein HuR couples pre-mRNA processing and mRNA stability
N Mukherjee, DL Corcoran, JD Nusbaum, DW Reid, S Georgiev, ...
Molecular cell 43 (3), 327-339, 2011
Mandates: US National Institutes of Health, Howard Hughes Medical Institute
The translational landscape of the human heart
S van Heesch, F Witte, V Schneider-Lunitz, JF Schulz, E Adami, AB Faber, ...
Cell 178 (1), 242-260. e29, 2019
Mandates: Howard Hughes Medical Institute, German Research Foundation, British Heart …
The viral and cellular microRNA targetome in lymphoblastoid cell lines
RL Skalsky, DL Corcoran, E Gottwein, CL Frank, D Kang, M Hafner, ...
PLoS pathogens 8 (1), e1002484, 2012
Mandates: US National Institutes of Health, Howard Hughes Medical Institute
Detecting actively translated open reading frames in ribosome profiling data
L Calviello, N Mukherjee, E Wyler, H Zauber, A Hirsekorn, M Selbach, ...
Nature methods 13 (2), 165-170, 2016
Mandates: US National Institutes of Health, European Commission
PARalyzer: definition of RNA binding sites from PAR-CLIP short-read sequence data
DL Corcoran, S Georgiev, N Mukherjee, E Gottwein, RL Skalsky, ...
Genome biology 12, 1-16, 2011
Mandates: US National Institutes of Health
Viral microRNA targetome of KSHV-infected primary effusion lymphoma cell lines
E Gottwein, DL Corcoran, N Mukherjee, RL Skalsky, M Hafner, ...
Cell host & microbe 10 (5), 515-526, 2011
Mandates: US National Institutes of Health, Howard Hughes Medical Institute
Translocation of sickle cell erythrocyte microRNAs into Plasmodium falciparum inhibits parasite translation and contributes to malaria resistance
G LaMonte, N Philip, J Reardon, JR Lacsina, W Majoros, L Chapman, ...
Cell host & microbe 12 (2), 187-199, 2012
Mandates: US National Institutes of Health, Doris Duke Charitable Foundation
Longitudinal multi-omics analyses identify responses of megakaryocytes, erythroid cells, and plasmablasts as hallmarks of severe COVID-19
JP Bernardes, N Mishra, F Tran, T Bahmer, L Best, JI Blase, D Bordoni, ...
Immunity 53 (6), 1296-1314. e9, 2020
Mandates: US National Institutes of Health, German Research Foundation, Helmholtz …
Predicting cell-type–specific gene expression from regions of open chromatin
A Natarajan, GG Yardımcı, NC Sheffield, GE Crawford, U Ohler
Genome research 22 (9), 1711-1722, 2012
Mandates: US National Institutes of Health
High-resolution expression map of the Arabidopsis root reveals alternative splicing and lincRNA regulation
S Li, M Yamada, X Han, U Ohler, PN Benfey
Developmental cell 39 (4), 508-522, 2016
Mandates: US National Science Foundation, US National Institutes of Health, Howard …
Integrated proteogenomic deep sequencing and analytics accurately identify non-canonical peptides in tumor immunopeptidomes
C Chong, M Müller, HS Pak, D Harnett, F Huber, D Grun, M Leleu, ...
Nature communications 11 (1), 1293, 2020
Mandates: Federal Ministry of Education and Research, Germany
Super-resolution ribosome profiling reveals unannotated translation events in Arabidopsis
PY Hsu, L Calviello, HYL Wu, FW Li, CJ Rothfels, U Ohler, PN Benfey
Proceedings of the National Academy of Sciences 113 (45), E7126-E7135, 2016
Mandates: US National Institutes of Health, US Department of Agriculture, Howard …
Purification of cross-linked RNA-protein complexes by phenol-toluol extraction
EC Urdaneta, CH Vieira-Vieira, T Hick, HH Wessels, D Figini, R Moschall, ...
Nature communications 10 (1), 990, 2019
Mandates: US National Institutes of Health, German Research Foundation, UK Medical …
A paired-end sequencing strategy to map the complex landscape of transcription initiation
T Ni, DL Corcoran, EA Rach, S Song, EP Spana, Y Gao, U Ohler, J Zhu
Nature methods 7 (7), 521-527, 2010
Mandates: US National Institutes of Health
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