Articles with public access mandates - Domenico CozzettoLearn more
Not available anywhere: 2
Evaluation of CASP8 model quality predictions
D Cozzetto, A Kryshtafovych, A Tramontano
Proteins: Structure, Function, and Bioinformatics 77 (S9), 157-166, 2009
Mandates: US National Institutes of Health
The contribution of intrinsic disorder prediction to the elucidation of protein function
D Cozzetto, DT Jones
Current opinion in structural biology 23 (3), 467-472, 2013
Mandates: UK Biotechnology and Biological Sciences Research Council
Available somewhere: 26
A large-scale evaluation of computational protein function prediction
P Radivojac, WT Clark, TR Oron, AM Schnoes, T Wittkop, A Sokolov, ...
Nature methods 10 (3), 221-227, 2013
Mandates: US National Institutes of Health
DISOPRED3: precise disordered region predictions with annotated protein-binding activity
DT Jones, D Cozzetto
Bioinformatics 31 (6), 857-863, 2015
Mandates: UK Biotechnology and Biological Sciences Research Council
An expanded evaluation of protein function prediction methods shows an improvement in accuracy
Y Jiang, TR Oron, WT Clark, AR Bankapur, D D’Andrea, R Lepore, ...
Genome biology 17, 1-19, 2016
Mandates: US National Science Foundation, US Department of Energy, Swiss National …
The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens
N Zhou, Y Jiang, TR Bergquist, AJ Lee, BZ Kacsoh, AW Crocker, ...
Genome biology 20, 1-23, 2019
Mandates: US National Science Foundation, Swiss National Science Foundation, US …
Critical assessment of protein intrinsic disorder prediction
M Necci, D Piovesan, MT Hoque, I Walsh, S Iqbal, M Vendruscolo, ...
Nature Methods, 2021
Mandates: US National Science Foundation, US National Institutes of Health, Australian …
Genetics of circulating inflammatory proteins identifies drivers of immune-mediated disease risk and therapeutic targets
JH Zhao, D Stacey, N Eriksson, E Macdonald-Dunlop, ÅK Hedman, ...
Nature immunology 24 (9), 1540-1551, 2023
Mandates: US National Institutes of Health, Helmholtz Association, Swedish Research …
Evaluation of template‐based models in CASP8 with standard measures
D Cozzetto, A Kryshtafovych, K Fidelis, J Moult, B Rost, A Tramontano
Proteins: Structure, Function, and Bioinformatics 77 (S9), 18-28, 2009
Mandates: US National Institutes of Health
Evaluation of predictions in the CASP10 model refinement category
T Nugent, D Cozzetto, DT Jones
Proteins: Structure, Function, and Bioinformatics 82, 98-111, 2014
Mandates: UK Biotechnology and Biological Sciences Research Council, UK Medical …
FFPred 3: feature-based function prediction for all Gene Ontology domains
D Cozzetto, F Minneci, H Currant, DT Jones
Scientific reports 6 (1), 31865, 2016
Mandates: UK Biotechnology and Biological Sciences Research Council
Interleukin-22 orchestrates a pathological endoplasmic reticulum stress response transcriptional programme in colonic epithelial cells
N Powell, E Pantazi, P Pavlidis, A Tsakmaki, K Li, F Yang, A Parker, C Pin, ...
Gut 69 (3), 578-590, 2020
Mandates: UK Medical Research Council, National Institute for Health Research, UK …
Predicting human protein function with multi-task deep neural networks
R Fa, D Cozzetto, C Wan, DT Jones
PloS one 13 (6), e0198216, 2018
Mandates: UK Biotechnology and Biological Sciences Research Council
FFPred 2.0: improved homology-independent prediction of gene ontology terms for eukaryotic protein sequences
F Minneci, D Piovesan, D Cozzetto, DT Jones
PLoS One 8 (5), e63754, 2013
Mandates: UK Biotechnology and Biological Sciences Research Council
Interleukin-22 regulates neutrophil recruitment in ulcerative colitis and is associated with resistance to ustekinumab therapy
P Pavlidis, A Tsakmaki, E Pantazi, K Li, D Cozzetto, J Digby-Bell, F Yang, ...
Nature communications 13 (1), 5820, 2022
Mandates: US National Institutes of Health, UK Biotechnology and Biological Sciences …
Genome3D: exploiting structure to help users understand their sequences
TE Lewis, I Sillitoe, A Andreeva, TL Blundell, DWA Buchan, C Chothia, ...
Nucleic Acids Research 43 (D1), D382-D386, 2015
Mandates: Bill & Melinda Gates Foundation, UK Biotechnology and Biological Sciences …
Cancer-associated hypersialylated MUC1 drives the differentiation of human monocytes into macrophages with a pathogenic phenotype
R Beatson, R Graham, F Grundland Freile, D Cozzetto, S Kannambath, ...
Communications biology 3 (1), 644, 2020
Mandates: Danish National Research Foundation, Cancer Research UK, UK Medical Research …
TGF-β1 potentiates Vγ9Vδ2 T cell adoptive immunotherapy of cancer
RE Beatson, AC Parente-Pereira, L Halim, D Cozzetto, C Hull, ...
Cell Reports Medicine 2 (12), 2021
Mandates: Blood Cancer UK, Cancer Research UK, UK Engineering and Physical Sciences …
Tumor-activated lymph node fibroblasts suppress T cell function in diffuse large B cell lymphoma
B Apollonio, F Spada, N Petrov, D Cozzetto, D Papazoglou, P Jarvis, ...
The Journal of clinical investigation 133 (13), 2023
Mandates: US National Institutes of Health, Versus Arthritis, UK, Blood Cancer UK …
Cytokine responsive networks in human colonic epithelial organoids unveil a molecular classification of inflammatory bowel disease
P Pavlidis, A Tsakmaki, A Treveil, K Li, D Cozzetto, F Yang, U Niazi, ...
Cell Reports 40 (13), 2022
Mandates: UK Biotechnology and Biological Sciences Research Council, Wellcome Trust …
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