Articles with public access mandates - Adam R. RiversLearn more
Available somewhere: 20
Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2
E Bolyen, JR Rideout, MR Dillon, NA Bokulich, CC Abnet, GA Al-Ghalith, ...
Nature biotechnology 37 (8), 852-857, 2019
Mandates: US National Science Foundation, US National Institutes of Health, US …
Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea
RM Bowers, NC Kyrpides, R Stepanauskas, M Harmon-Smith, D Doud, ...
Nature biotechnology 35 (8), 725-731, 2017
Mandates: US National Science Foundation, US Department of Energy, US National …
QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science
E Bolyen, JR Rideout, MR Dillon, NA Bokulich, C Abnet, GA Al-Ghalith, ...
PeerJ Preprints, 2018
Mandates: US National Science Foundation, US National Institutes of Health, National …
IMG/VR: a database of cultured and uncultured DNA Viruses and retroviruses
D Paez-Espino, IMA Chen, K Palaniappan, A Ratner, K Chu, E Szeto, ...
Nucleic acids research 45 (D1), gkw1030, 2016
Mandates: US Department of Energy
ITSxpress: Software to rapidly trim internally transcribed spacer sequences with quality scores for marker gene analysis
AR Rivers, KC Weber, TG Gardner, S Liu, SD Armstrong
F1000Research 7, 2018
Mandates: US Department of Agriculture
Patterns and drivers of fungal community depth stratification in Sphagnum peat
LJ Lamit, KJ Romanowicz, LR Potvin, AR Rivers, K Singh, JT Lennon, ...
FEMS microbiology ecology 93 (7), fix082, 2017
Mandates: US National Science Foundation, US Department of Energy, US Department of …
Changes in rhizosphere soil microbial communities across plant developmental stages of high and low methane emitting rice genotypes
CP Fernández-Baca, AR Rivers, W Kim, R Iwata, AM McClung, ...
Soil Biology and Biochemistry 156, 108233, 2021
Mandates: US Department of Agriculture
Spatial Homogeneity of Bacterial Communities Associated with the Surface Mucus Layer of the Reef-Building Coral Acropora palmata
DW Kemp, AR Rivers, KM Kemp, EK Lipp, JW Porter, JP Wares
PloS one 10 (12), e0143790, 2015
Mandates: US Department of Energy
Under-the-radar dengue virus infections in natural populations of Aedes aegypti mosquitoes
SM Boyles, CN Mavian, E Finol, M Ukhanova, CJ Stephenson, ...
Msphere 5 (2), 10.1128/msphere. 00316-20, 2020
Mandates: US Department of Agriculture, Florida Department of Health, USA
Harnessing AI to transform agriculture and inform agricultural research
DPC Peters, A Rivers, JL Hatfield, DG Lemay, S Liu, B Basso
IT Professional 22 (3), 16-21, 2020
Mandates: US Department of Agriculture
Genomic signatures for sedimentary microbial utilization of phytoplankton detritus in a fast-flowing estuary
MW Smith, L Herfort, AR Rivers, HM Simon
Frontiers in Microbiology 10, 2475, 2019
Mandates: US National Science Foundation, US Department of Energy
Experimental Identification of Small Non-Coding RNAs in the Model Marine Bacterium Ruegeria pomeroyi DSS-3
AR Rivers, AS Burns, LK Chan, MA Moran
Frontiers in Microbiology 7, 380, 2016
Mandates: US National Science Foundation, US Department of Energy
Graph-based pangenomics maximizes genotyping density and reveals structural impacts on fungal resistance in melon
JN Vaughn, SE Branham, B Abernathy, AM Hulse-Kemp, AR Rivers, ...
Nature communications 13 (1), 7897, 2022
Mandates: US Department of Agriculture
Advancing equity and inclusion in microbiome research and training
AJ Foxx, KP Franco Meléndez, J Hariharan, AJ Kozik, CJ Wattenburger, ...
Msystems 6 (5), 10.1128/msystems. 01151-21, 2021
Mandates: US Department of Energy, US National Institutes of Health, US Department of …
GuideMaker: Software to design CRISPR-Cas guide RNA pools in non-model genomes
R Poudel, LT Rodriguez, CR Reisch, AR Rivers
GigaScience 11, giac007, 2022
Mandates: US Department of Agriculture
Rice plant–soil microbiome interactions driven by root and shoot biomass
CP Fernández-Baca, AR Rivers, JE Maul, W Kim, R Poudel, AM McClung, ...
Diversity 13 (3), 125, 2021
Mandates: US Department of Agriculture
Graph-based pangenomics maximizes genotyping density and reveals structural impacts on fungal resistance
JN Vaughn, SE Branham, BL Abernathy, AM Hulse-Kemp, A Rivers, ...
bioRxiv, 2022.06. 10.495676, 2022
Mandates: US Department of Agriculture
An Arrayed Transposon Library of Ruegeria pomeroyi DSS-3
C Mejia, L Trujillo Rodriguez, R Poudel, A Ellington, AR Rivers, ...
bioRxiv, 2022.09. 11.507510, 2022
Mandates: US National Science Foundation, US Department of Agriculture
AT Homopolymer Strings in Salmonella enterica Subspecies I Contribute to Speciation and Serovar Diversity
J Guard, AR Rivers, JN Vaughn, MJ Rothrock, Jr, A Oladeinde, DH Shah
Microorganisms 9 (10), 2075, 2021
Mandates: US Department of Agriculture
An online calculator for marine phytoplankton iron culturing experiments
AR Rivers, AL Rose, EA Webb
Journal of phycology 49 (5), 1017-1021, 2013
Mandates: Australian Research Council
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