Articles with public access mandates - Frank AarestrupLearn more
Not available anywhere: 1
Review
Comparative genomics of toxigenic and non-toxigenic Staphylococcus hyicus
P Leekitcharoenphon, SJ Pamp, LO Andresen, FM Aarestrup
Veterinary Microbiology 185, 34-40, 2016
Mandates: Danish Council for Strategic Research
Available somewhere: 143
Review
Identification of acquired antimicrobial resistance genes
E Zankari, H Hasman, S Cosentino, M Vestergaard, S Rasmussen, ...
Journal of antimicrobial chemotherapy 67 (11), 2640-2644, 2012
Mandates: Danish Council for Strategic Research
Review
In Silico Detection and Typing of Plasmids using PlasmidFinder and Plasmid Multilocus Sequence Typing
A Carattoli, E Zankari, A García-Fernández, M Voldby Larsen, O Lund, ...
Antimicrobial agents and chemotherapy 58 (7), 3895-3903, 2014
Mandates: Danish Council for Strategic Research, Government of Italy
Review
ResFinder 4.0 for predictions of phenotypes from genotypes
V Bortolaia, RS Kaas, E Ruppe, MC Roberts, S Schwarz, V Cattoir, ...
Journal of Antimicrobial Chemotherapy 75 (12), 3491-3500, 2020
Mandates: European Commission, Federal Ministry of Education and Research, Germany
Review
Real-time whole-genome sequencing for routine typing, surveillance, and outbreak detection of verotoxigenic Escherichia coli
KG Joensen, F Scheutz, O Lund, H Hasman, RS Kaas, EM Nielsen, ...
Journal of clinical microbiology 52 (5), 1501-1510, 2014
Mandates: Danish Council for Strategic Research
Review
Staphylococcus aureus CC398: host adaptation and emergence of methicillin resistance in livestock
LB Price, M Stegger, H Hasman, M Aziz, J Larsen, PS Andersen, ...
MBio 3 (1), 10.1128/mbio. 00305-11, 2012
Mandates: US National Institutes of Health
Review
Solving the problem of comparing whole bacterial genomes across different sequencing platforms
RS Kaas, P Leekitcharoenphon, FM Aarestrup, O Lund
PloS one 9 (8), e104984, 2014
Mandates: Danish Council for Strategic Research
Review
Global monitoring of antimicrobial resistance based on metagenomics analyses of urban sewage
RS Hendriksen, P Munk, P Njage, B Van Bunnik, L McNally, ...
Nature communications 10 (1), 1124, 2019
Mandates: Villum Foundation, European Commission
Review
PointFinder: a novel web tool for WGS-based detection of antimicrobial resistance associated with chromosomal point mutations in bacterial pathogens
E Zankari, R Allesøe, KG Joensen, LM Cavaco, O Lund, FM Aarestrup
Journal of Antimicrobial Chemotherapy 72 (10), 2764-2768, 2017
Mandates: Danish Council for Strategic Research, European Commission
Review
Rapid and precise alignment of raw reads against redundant databases with KMA
PTLC Clausen, FM Aarestrup, O Lund
BMC bioinformatics 19, 1-8, 2018
Mandates: European Commission
Review
Rapid whole-genome sequencing for detection and characterization of microorganisms directly from clinical samples
H Hasman, D Saputra, T Sicheritz-Ponten, O Lund, CA Svendsen, ...
Journal of clinical microbiology 52 (1), 139-146, 2014
Mandates: Danish Council for Strategic Research
Review
The role of whole genome sequencing in antimicrobial susceptibility testing of bacteria: report from the EUCAST Subcommittee
MJ Ellington, O Ekelund, FM Aarestrup, R Canton, M Doumith, C Giske, ...
Clinical microbiology and infection 23 (1), 2-22, 2017
Mandates: National Health and Medical Research Council, Australia, Marianne and Marcus …
Review
PathogenFinder-distinguishing friend from foe using bacterial whole genome sequence data
S Cosentino, M Voldby Larsen, F Møller Aarestrup, O Lund
PloS one 8 (10), e77302, 2013
Mandates: Danish Council for Strategic Research
Review
Detection of mcr-1 encoding plasmid-mediated colistin-resistant Escherichia coli isolates from human bloodstream infection and imported chicken meat, Denmark 2015
H Hasman, AM Hammerum, F Hansen, RS Hendriksen, B Olesen, ...
Eurosurveillance 20 (49), 30085, 2015
Mandates: Danish Council for Strategic Research
Review
World Health Organization ranking of antimicrobials according to their importance in human medicine: a critical step for developing risk management strategies for the use of …
FJ Angulo, P Collignon, JH Powers, TM Chiller, A Aidara-Kane, ...
Clinical infectious diseases 49 (1), 132-141, 2009
Mandates: US National Institutes of Health
Review
Genotyping using whole-genome sequencing is a realistic alternative to surveillance based on phenotypic antimicrobial susceptibility testing
E Zankari, H Hasman, RS Kaas, AM Seyfarth, Y Agersø, O Lund, ...
Journal of antimicrobial chemotherapy 68 (4), 771-777, 2013
Mandates: Danish Council for Strategic Research
Review
Using genomics to track global antimicrobial resistance
RS Hendriksen, V Bortolaia, H Tate, GH Tyson, FM Aarestrup, ...
Frontiers in public health 7, 242, 2019
Mandates: European Commission
Review
Benchmarking of methods for genomic taxonomy
MV Larsen, S Cosentino, O Lukjancenko, D Saputra, S Rasmussen, ...
Journal of clinical microbiology 52 (5), 1529-1539, 2014
Mandates: Danish Council for Strategic Research
Review
International Spread of an Epidemic Population of Salmonella enterica Serotype Kentucky ST198 Resistant to Ciprofloxacin
S Le Hello, RS Hendriksen, B Doublet, I Fisher, EM Nielsen, JM Whichard, ...
Journal of Infectious Diseases 204 (5), 675-684, 2011
Mandates: Science Foundation Ireland
Review
ResFinder–an open online resource for identification of antimicrobial resistance genes in next-generation sequencing data and prediction of phenotypes from genotypes
AF Florensa, RS Kaas, PTLC Clausen, D Aytan-Aktug, FM Aarestrup
Microbial Genomics 8 (1), 000748, 2022
Mandates: European Commission
Publication and funding information is determined automatically by a computer program