Evaluation of production serverless computing environments H Lee, K Satyam, G Fox 2018 IEEE 11th International Conference on Cloud Computing (CLOUD), 442-450, 2018 | 234 | 2018 |
AI-driven multiscale simulations illuminate mechanisms of SARS-CoV-2 spike dynamics L Casalino, AC Dommer, Z Gaieb, EP Barros, T Sztain, SH Ahn, A Trifan, ... The International Journal of High Performance Computing Applications 35 (5 …, 2021 | 162 | 2021 |
High-throughput virtual screening and validation of a SARS-CoV-2 main protease noncovalent inhibitor A Clyde, S Galanie, DW Kneller, H Ma, Y Babuji, B Blaiszik, A Brace, ... Journal of chemical information and modeling 62 (1), 116-128, 2021 | 98 | 2021 |
Deepdrivemd: Deep-learning driven adaptive molecular simulations for protein folding H Lee, M Turilli, S Jha, D Bhowmik, H Ma, A Ramanathan 2019 IEEE/ACM Third Workshop on Deep Learning on Supercomputers (DLS), 12-19, 2019 | 73 | 2019 |
# COVIDisAirborne: AI-enabled multiscale computational microscopy of delta SARS-CoV-2 in a respiratory aerosol A Dommer, L Casalino, F Kearns, M Rosenfeld, N Wauer, SH Ahn, ... The international journal of high performance computing applications 37 (1 …, 2023 | 70 | 2023 |
Impeccable: Integrated modeling pipeline for covid cure by assessing better leads AA Saadi, D Alfe, Y Babuji, A Bhati, B Blaiszik, A Brace, T Brettin, K Chard, ... Proceedings of the 50th International Conference on Parallel Processing, 1-12, 2021 | 37 | 2021 |
BioVLAB-MMIA: a cloud environment for microRNA and mRNA integrated analysis (MMIA) on Amazon EC2 H Lee, Y Yang, H Chae, S Nam, D Choi, P Tangchaisin, C Herath, ... IEEE transactions on nanobioscience 11 (3), 266-272, 2012 | 37 | 2012 |
MGEScan: a Galaxy-based system for identifying retrotransposons in genomes H Lee, M Lee, W Mohammed Ismail, M Rho, GC Fox, S Oh, H Tang Bioinformatics 32 (16), 2502-2504, 2016 | 29 | 2016 |
Bio and health informatics meets cloud: BioVLab as an example H Chae, I Jung, H Lee, S Marru, SW Lee, S Kim Health Information Science and Systems 1, 1-9, 2013 | 27 | 2013 |
Extensible and Scalable Adaptive Sampling on Supercomputers E Hruska, V Balasubramanian, H Lee, S Jha, C Clementi Journal of Chemical Theory and Computation, 2020 | 24 | 2020 |
Virtualization Basics: Understanding Techniques and Fundamentals H Lee | 23 | 2014 |
Scalable HPC & AI infrastructure for COVID-19 therapeutics H Lee, A Merzky, L Tan, M Titov, M Turilli, D Alfe, A Bhati, A Brace, ... Proceedings of the Platform for Advanced Scientific Computing Conference, 1-13, 2021 | 22 | 2021 |
Coupling streaming ai and hpc ensembles to achieve 100–1000× faster biomolecular simulations A Brace, I Yakushin, H Ma, A Trifan, T Munson, I Foster, A Ramanathan, ... 2022 IEEE International Parallel and Distributed Processing Symposium (IPDPS …, 2022 | 17 | 2022 |
Accessing multiple clouds with cloudmesh G Von Laszewski, F Wang, H Lee, H Chen, GC Fox Proceedings of the 2014 ACM international workshop on Software-defined …, 2014 | 13 | 2014 |
Deep generative model driven protein folding simulations H Ma, D Bhowmik, H Lee, M Turilli, M Young, S Jha, A Ramanathan Parallel Computing: Technology Trends, 45-55, 2020 | 12 | 2020 |
Achieving 100x faster simulations of complex biological phenomena by coupling ml to hpc ensembles A Brace, H Lee, H Ma, A Trifan, M Turilli, I Yakushin, T Munson, I Foster, ... arXiv preprint arXiv:2104.04797, 2021 | 11 | 2021 |
Big data benchmarks of high-performance storage systems on commercial bare metal clouds H Lee, G Fox 2019 IEEE 12th International Conference on Cloud Computing (CLOUD), 1-8, 2019 | 11 | 2019 |
Design of an accounting and metric-basedcloud-shifting and cloud-seeding framework for federatedclouds and bare-metal environments G von Laszewski, H Lee, J Diaz, F Wang, K Tanaka, S Karavinkoppa, ... Proceedings of the 2012 workshop on Cloud services, federation, and the 8th …, 2012 | 9 | 2012 |
Large-Scale Molecular Dynamics Simulations of Cellular Compartments E Wilson, J Vant, J Layton, R Boyd, H Lee, M Turilli, B Hernández, ... Structure and Function of Membrane Proteins, 335-356, 2021 | 5 | 2021 |
AI-driven Multiscale Simulations Illuminate Mechanisms of SARS-CoV-2 Spike Dynamics, 2020 L Casalino, A Dommer, Z Gaieb, EP Barros, T Sztain, SH Ahn, A Trifan, ... DOI: https://doi. org/10.1101/2020.11 19, 2020 | 5 | 2020 |