Articles with public access mandates - Kathryn HoltLearn more
OverallNHMRCWellcomeGatesNIHRMRCNIHEuropean CommissionBBSRCARCUK Research & InnovationNSFCBHFCIHRDFIDNSERCDOEDFGSFISwedish Research CouncilAcademy of Medical Sciences, UKCSOGovernment of SpainNSFSNSFFCTEPSRCESRCHealth Data Research, UKMedical Research Future Fund, AustraliaFAPESPDoDVAUSAIDHHMIGBMFFWOFRQSGenome CanadaINSERMA*StarWHONRFANRNMRCRoyal Society UKEDCTP
Not available anywhere: 3
Distinct increase in antimicrobial resistance genes among Escherichia coli during 50 years of antimicrobial use in livestock production in China
L Yang, Y Shen, J Jiang, X Wang, D Shao, M Lam, KE Holt, B Shao, C Wu, ...
Nature Food 3 (3), 197-205, 2022
Mandates: National Natural Science Foundation of China, UK Medical Research Council
pCERC3 from a commensal ST95 Escherichia coli: A ColV virulence-multiresistance plasmid carrying a sul3-associated class 1 integron
RA Moran, KE Holt, RM Hall
Plasmid 84, 11-19, 2016
Mandates: National Health and Medical Research Council, Australia
Multidrug-resistant Shigella sonnei carrying the plasmid-mediated mcr-1 gene in China
Q Ma, Y Huang, J Wang, X Xu, J Hawkey, C Yang, B Liang, X Hu, F Wu, ...
International journal of antimicrobial agents 52 (1), 14-21, 2018
Mandates: National Natural Science Foundation of China
Available somewhere: 206
Unicycler: resolving bacterial genome assemblies from short and long sequencing reads
RR Wick, LM Judd, CL Gorrie, KE Holt
PLOS Computational Biology 13 (6), e1005595, 2017
Mandates: National Health and Medical Research Council, Australia
Out-of-Africa migration and Neolithic coexpansion of Mycobacterium tuberculosis with modern humans
I Comas, M Coscolla, T Luo, S Borrell, KE Holt, M Kato-Maeda, J Parkhill, ...
Nature genetics 45 (10), 1176-1182, 2013
Mandates: Swiss National Science Foundation, US National Institutes of Health, UK …
Genomic analysis of diversity, population structure, virulence, and antimicrobial resistance in Klebsiella pneumoniae, an urgent threat to public health
KE Holt, H Wertheim, RN Zadoks, S Baker, CA Whitehouse, D Dance, ...
Proceedings of the National Academy of Sciences 112 (27), E3574-E3581, 2015
Mandates: National Health and Medical Research Council, Australia, Wellcome Trust
Performance of neural network basecalling tools for Oxford Nanopore sequencing
RR Wick, LM Judd, KE Holt
Genome Biology 20 (1), 129, 2019
Mandates: Bill & Melinda Gates Foundation
SRST2: Rapid genomic surveillance for public health and hospital microbiology labs
M Inouye, H Dashnow, LA Raven, MB Schultz, BJ Pope, T Tomita, J Zobel, ...
Genome Medicine 6 (11), 1-16, 2014
Mandates: National Health and Medical Research Council, Australia
The Infant Nasopharyngeal Microbiome Impacts Severity of Lower Respiratory Infection and Risk of Asthma Development
SM Teo, D Mok, K Pham, M Kusel, M Serralha, N Troy, BJ Holt, BJ Hales, ...
Cell Host and Microbe 17 (5), 704-715, 2015
Mandates: US National Institutes of Health, National Health and Medical Research …
Completing bacterial genome assemblies with multiplex MinION sequencing
RR Wick, LM Judd, CL Gorrie, KE Holt
Microbial Genomics, 2017
Mandates: National Health and Medical Research Council, Australia
Epidemic multiple drug resistant Salmonella Typhimurium causing invasive disease in sub-Saharan Africa have a distinct genotype
RA Kingsley, CL Msefula, NR Thomson, S Kariuki, KE Holt, MA Gordon, ...
Genome research 19 (12), 2279-2287, 2009
Mandates: Science Foundation Ireland
Klebsiella pneumoniae as a key trafficker of drug resistance genes from environmental to clinically important bacteria
KL Wyres, KE Holt
Current opinion in microbiology 45, 131-139, 2018
Mandates: Bill & Melinda Gates Foundation
A genomic surveillance framework and genotyping tool for Klebsiella pneumoniae and its related species complex
MMC Lam, RR Wick, SC Watts, LT Cerdeira, KL Wyres, KE Holt
Nature communications 12 (1), 4188, 2021
Mandates: Bill & Melinda Gates Foundation, National Health and Medical Research …
Gastrointestinal carriage is a major reservoir of Klebsiella pneumoniae infection in intensive care patients
CL Gorrie, M Mirčeta, RR Wick, DJ Edwards, NR Thomson, RA Strugnell, ...
Clinical Infectious Diseases 65 (2), 208-215, 2017
Mandates: National Health and Medical Research Council, Australia, Wellcome Trust
Phylogeographical analysis of the dominant multidrug-resistant H58 clade of Salmonella Typhi identifies inter-and intracontinental transmission events
VK Wong, S Baker, DJ Pickard, J Parkhill, AJ Page, NA Feasey, ...
Nature Genetics 47 (6), 632-639, 2015
Mandates: Bill & Melinda Gates Foundation, US National Institutes of Health, National …
Identification of Klebsiella capsule synthesis loci from whole genome data
K Wyres, RR Wick, C Gorrie, A Jenney, R Follador, NR Thomson, KE Holt
bioRxiv, 071415, 2016
Mandates: National Health and Medical Research Council, Australia, Wellcome Trust
Shigella sonnei genome sequencing and phylogenetic analysis indicate recent global dissemination from Europe
KE Holt, S Baker, FX Weill, EC Holmes, A Kitchen, J Yu, V Sangal, ...
Nature genetics 44 (9), 1056-1059, 2012
Mandates: National Health and Medical Research Council, Australia
Genomic insights into the emergence and spread of antimicrobial-resistant bacterial pathogens
S Baker, N Thomson, FX Weill, KE Holt
Science 360 (6390), 733-738, 2018
Mandates: Howard Hughes Medical Institute, Wellcome Trust
Genetic diversity, mobilisation and spread of the yersiniabactin-encoding mobile element ICEKp in Klebsiella pneumoniae populations
MMC Lam, RR Wick, KL Wyres, CL Gorrie, LM Judd, AWJ Jenney, ...
Microbial genomics 4 (9), 2018
Mandates: Bill & Melinda Gates Foundation, National Health and Medical Research …
Polypolish: short-read polishing of long-read bacterial genome assemblies
RR Wick, KE Holt
PLOS Computational Biology 18 (1), e1009802, 2022
Mandates: Bill & Melinda Gates Foundation
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