Articles with public access mandates - Josh T CuperusLearn more
Available somewhere: 27
Specificity of ARGONAUTE7-miR390 interaction and dual functionality in TAS3 trans-acting siRNA formation
TA Montgomery, MD Howell, JT Cuperus, D Li, JE Hansen, AL Alexander, ...
Cell 133 (1), 128-141, 2008
Mandates: US National Institutes of Health
Unique functionality of 22-nt miRNAs in triggering RDR6-dependent siRNA biogenesis from target transcripts in Arabidopsis
JT Cuperus, A Carbonell, N Fahlgren, H Garcia-Ruiz, RT Burke, A Takeda, ...
Nature structural & molecular biology 17 (8), 997-1003, 2010
Mandates: US National Institutes of Health
Dynamics of Gene Expression in Single Root Cells of Arabidopsis thaliana
K Jean-Baptiste, JL McFaline-Figueroa, CM Alexandre, MW Dorrity, ...
The plant cell 31 (5), 993-1011, 2019
Mandates: US National Science Foundation, US National Institutes of Health
Functional Analysis of Three Arabidopsis ARGONAUTES Using Slicer-Defective Mutants
A Carbonell, N Fahlgren, H Garcia-Ruiz, KB Gilbert, TA Montgomery, ...
The Plant Cell 24 (9), 3613-3629, 2012
Mandates: US National Institutes of Health, Government of Spain
Deep learning of the regulatory grammar of yeast 5′ untranslated regions from 500,000 random sequences
JT Cuperus, B Groves, A Kuchina, AB Rosenberg, N Jojic, S Fields, ...
Genome research 27 (12), 2015-2024, 2017
Mandates: US National Science Foundation, US Department of Defense, US National …
Identification of MIR390a precursor processing-defective mutants in Arabidopsis by direct genome sequencing
JT Cuperus, TA Montgomery, N Fahlgren, RT Burke, T Townsend, ...
Proceedings of the National Academy of Sciences 107 (1), 466-471, 2010
Mandates: US National Institutes of Health
New generation of artificial MicroRNA and synthetic trans-acting small interfering RNA vectors for efficient gene silencing in Arabidopsis
A Carbonell, A Takeda, N Fahlgren, SC Johnson, JT Cuperus, ...
Plant physiology 165 (1), 15-29, 2014
Mandates: US National Institutes of Health
The regulatory landscape of Arabidopsis thaliana roots at single-cell resolution
MW Dorrity, CM Alexandre, MO Hamm, AL Vigil, S Fields, C Queitsch, ...
Nature communications 12 (1), 3334, 2021
Mandates: US National Science Foundation, US National Institutes of Health
Synthetic promoter designs enabled by a comprehensive analysis of plant core promoters
T Jores, J Tonnies, T Wrightsman, ES Buckler, JT Cuperus, S Fields, ...
Nature Plants 7 (6), 842-855, 2021
Mandates: US National Science Foundation, US National Institutes of Health, German …
A single-cell view of the transcriptome during lateral root initiation in Arabidopsis thaliana
HP Gala, A Lanctot, K Jean-Baptiste, S Guiziou, JC Chu, JE Zemke, ...
The Plant Cell 33 (7), 2197-2220, 2021
Mandates: US National Science Foundation, US National Institutes of Health, Howard …
Identification of genes required for de novo DNA methylation in Arabidopsis
MVC Greenberg, I Ausin, SWL Chan, SJ Cokus, JT Cuperus, S Feng, ...
Epigenetics 6 (3), 344-354, 2011
Mandates: US National Institutes of Health, Howard Hughes Medical Institute
Phytophthora have distinct endogenous small RNA populations that include short interfering and microRNAs
N Fahlgren, SR Bollmann, KD Kasschau, JT Cuperus, CM Press, ...
PLoS One 8 (10), e77181, 2013
Mandates: US National Institutes of Health
Identification of plant enhancers and their constituent elements by STARR-seq in tobacco leaves
T Jores, J Tonnies, MW Dorrity, JT Cuperus, S Fields, C Queitsch
The Plant Cell 32 (7), 2120-2131, 2020
Mandates: US National Science Foundation, US National Institutes of Health
Single-cell genomics in plants: current state, future directions, and hurdles to overcome
JT Cuperus
Plant Physiology 188 (2), 749-755, 2022
Mandates: US National Science Foundation, US National Institutes of Health
Complex Relationships between Chromatin Accessibility, Sequence Divergence, and Gene Expression in Arabidopsis thaliana
CM Alexandre, JR Urton, K Jean-Baptiste, J Huddleston, MW Dorrity, ...
Molecular Biology and Evolution 35 (4), 837-854, 2018
Mandates: US National Science Foundation, US National Institutes of Health, Howard …
The promise of single-cell genomics in plants
JL McFaline-Figueroa, C Trapnell, JT Cuperus
Current opinion in plant biology 54, 114-121, 2020
Mandates: US National Institutes of Health
A tetO Toolkit To Alter Expression of Genes in Saccharomyces cerevisiae
JT Cuperus, RS Lo, L Shumaker, J Proctor, S Fields
ACS synthetic biology 4 (7), 842-852, 2015
Mandates: US National Institutes of Health, Howard Hughes Medical Institute
Preferences in a trait decision determined by transcription factor variants
MW Dorrity, JT Cuperus, JA Carlisle, S Fields, C Queitsch
Proceedings of the National Academy of Sciences 115 (34), E7997-E8006, 2018
Mandates: US National Science Foundation, US National Institutes of Health, Howard …
Effects of sequence motifs in the yeast 3′ untranslated region determined from massively parallel assays of random sequences
A Savinov, BM Brandsen, BE Angell, JT Cuperus, S Fields
Genome Biology 22, 1-27, 2021
Mandates: US National Institutes of Health
AGO1 and HSP90 buffer different genetic variants in Arabidopsis thaliana
T Lemus, GA Mason, KL Bubb, CM Alexandre, C Queitsch, JT Cuperus
Genetics 223 (2), iyac163, 2023
Mandates: US National Science Foundation, US National Institutes of Health
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