MODA: an efficient algorithm for network motif discovery in biological networks S Omidi, F Schreiber, A Masoudi-Nejad Genes & genetic systems 84 (5), 385-395, 2009 | 186 | 2009 |
Temperature regulates splicing efficiency of the cold-inducible RNA-binding protein gene Cirbp I Gotic, S Omidi, F Fleury-Olela, N Molina, F Naef, U Schibler Genes & development 30 (17), 2005-2017, 2016 | 80 | 2016 |
The SIB Swiss Institute of Bioinformatics’ resources: focus on curated databases SIB Swiss Institute of Bioinformatics Members Nucleic acids research 44 (D1), D27-D37, 2016 | 51 | 2016 |
Memory and relatedness of transcriptional activity in mammalian cell lineages NE Phillips, A Mandic, S Omidi, F Naef, DM Suter Nature communications 10 (1), 1208, 2019 | 44 | 2019 |
Improved immune genetic algorithm for clustering protein-protein interaction network H Ravaee, A Masoudi-Nejad, S Omidi, A Moeini 2010 IEEE International Conference on BioInformatics and BioEngineering, 174-179, 2010 | 16 | 2010 |
Automated incorporation of pairwise dependency in transcription factor binding site prediction using dinucleotide weight tensors S Omidi, M Zavolan, M Pachkov, J Breda, S Berger, E van Nimwegen PLoS computational biology 13 (7), e1005176, 2017 | 14 | 2017 |
Crunch: integrated processing and modeling of ChIP-seq data in terms of regulatory motifs S Berger, M Pachkov, P Arnold, S Omidi, N Kelley, S Salatino, ... Genome research 29 (7), 1164-1177, 2019 | 13* | 2019 |
Network evolution: theory and mechanisms S Omidi, A Masoudi-Nejad Computational Social Network Analysis: Trends, Tools and Research Advances …, 2010 | 3 | 2010 |
Gene-specific transcriptional memory in mammalian cell lineages NE Phillips, A Mandic, S Omidi, F Naef, DM Suter bioRxiv, 411447, 2018 | | 2018 |
The Genomic Context and Corecruitment of SP1 Affect ERR alpha Coactivation by PGC-1 alpha in Muscle Cells (vol 30, pg 809, 2016) S Salatino, B Kupr, M Baresic, S Omidi, E van Nimwegen, C Handschin ENDOCRINOLOGY 159 (7), 2703-2703, 2018 | | 2018 |
CORRIGENDUM FOR “The Genomic Context and Corecruitment of SP1 Affect ERRa Coactivation by PGC-1a in Muscle Cells” BK Salatino, M Baresic, E van Nimwegen, C Handschin, S Salatino, ... | | 2018 |