Articles with public access mandates - Elham AziziLearn more
Not available anywhere: 1
A thousand and one tumors: the promise of AI for cancer biology
JL Fan, A Nazaret, E Azizi
Nature Methods 21 (8), 1403-1406, 2024
Mandates: Chan Zuckerberg Initiative
Available somewhere: 21
Single-cell map of diverse immune phenotypes in the breast tumor microenvironment
E Azizi, AJ Carr, G Plitas, AE Cornish, C Konopacki, S Prabhakaran, ...
Cell, 2018
Mandates: US National Institutes of Health, Howard Hughes Medical Institute
The Mycobacterium tuberculosis regulatory network and hypoxia
JE Galagan, K Minch*, M Peterson*, A Lyubetskaya*, E Azizi*, L Sweet*, ...
Nature 499 (7457), 178-183, 2013
Mandates: US National Institutes of Health
A gene–environment-induced epigenetic program initiates tumorigenesis
D Alonso-Curbelo, YJ Ho, C Burdziak, JLV Maag, JP Morris IV, ...
Nature 590 (7847), 642-648, 2021
Mandates: US National Institutes of Health, Howard Hughes Medical Institute, Banking …
Dirichlet process mixture model for correcting technical variation in single-cell gene expression data
S Prabhakaran*, E Azizi*, A Carr, D Pe’er
Proceedings of The 33rd International Conference on Machine Learning (ICML …, 2016
Mandates: US National Science Foundation, US National Institutes of Health
Cohesin members Stag1 and Stag2 display distinct roles in chromatin accessibility and topological control of HSC self-renewal and differentiation
AD Viny, RL Bowman, Y Liu, VP Lavallée, SE Eisman, W Xiao, ...
Cell stem cell 25 (5), 682-696. e8, 2019
Mandates: US National Institutes of Health, Damon Runyon Cancer Research Foundation
Dissecting the treatment-naive ecosystem of human melanoma brain metastasis
J Biermann, JC Melms, AD Amin, Y Wang, LA Caprio, A Karz, S Tagore, ...
Cell 185 (14), 2591-2608. e30, 2022
Mandates: US National Institutes of Health, German Research Foundation, Federal …
IL-2 production by self-reactive CD4 thymocytes scales regulatory T cell generation in the thymus
S Hemmers, M Schizas, E Azizi, S Dikiy, Y Zhong, Y Feng, G Altan-Bonnet, ...
Journal of Experimental Medicine, 2019
Mandates: US National Institutes of Health, Howard Hughes Medical Institute
Mapping the evolution of T cell states during response and resistance to adoptive cellular therapy
P Bachireddy*, E Azizi*, C Burdziak, VN Nguyen, C Ennis, K Maurer, ...
Cell Reports 37 (6), 2021
Mandates: US National Institutes of Health, Damon Runyon Cancer Research Foundation …
The Neurospora Transcription Factor ADV-1 Transduces Light Signals and Temporal Information to Control Rhythmic Expression of Genes Involved in Cell Fusion
R Dekhang, C Wu, KM Smith, TM Lamb, M Peterson, EL Bredeweg, ...
G3: Genes, Genomes, Genetics 7 (1), 129-142, 2017
Mandates: US National Institutes of Health
Multimodal single-cell and whole-genome sequencing of small, frozen clinical specimens
Y Wang, JL Fan, JC Melms, AD Amin, Y Georgis, I Barrera, P Ho, ...
Nature genetics 55 (1), 19-25, 2023
Mandates: US National Science Foundation, US National Institutes of Health, Melanoma …
Decoding ChIP-seq with a double-binding signal refines binding peaks to single-nucleotides and predicts cooperative interaction
ALC Gomes, T Abeel, M Peterson, E Azizi, A Lyubetskaya, L Carvalho, ...
Genome research 24 (10), 1686-1697, 2014
Mandates: US National Institutes of Health
Notch3 signaling promotes tumor cell adhesion and progression in a murine epithelial ovarian cancer model
JC Price, E Azizi, LA Naiche, JG Parvani, P Shukla, S Kim, JK Slack-Davis, ...
PloS one 15 (6), e0233962, 2020
Mandates: US National Institutes of Health
Deep generative modeling of sample-level heterogeneity in single-cell genomics
P Boyeau, J Hong, A Gayoso, M Kim, JL McFaline-Figueroa, MI Jordan, ...
BioRxiv, 2022.10. 04.510898, 2022
Mandates: US National Institutes of Health, Chan Zuckerberg Initiative
Learning modular structures from network data and node variables
E Azizi, E Airoldi, J Galagan
Proceedings of the 31st International Conference on Machine Learning (ICML …, 2014
Mandates: US National Institutes of Health
Starfysh integrates spatial transcriptomic and histologic data to reveal heterogeneous tumor–immune hubs
S He, Y Jin, A Nazaret, L Shi, X Chen, S Rampersaud, BS Dhillon, ...
Nature Biotechnology, 1-13, 2024
Mandates: Howard Hughes Medical Institute, Chan Zuckerberg Initiative
Stag1 and Stag2 regulate cell fate decisions in hematopoiesis through non-redundant topological control
AD Viny, RL Bowman, Y Liu, VP Lavallée, SE Eisman, W Xiao, ...
bioRxiv, 581868, 2019
Mandates: US National Institutes of Health, Damon Runyon Cancer Research Foundation
Mapping morphological malformation to genetic dysfunction in blood vessel organoids with 22q11. 2 Deletion Syndrome
S He, C Xu, YH Lao, S Chauhan, Y Xiao, MJ Willner, Y Jin, S McElroy, ...
bioRxiv, 2021.11. 17.468969, 2021
Mandates: US National Institutes of Health
Cellstitch: 3D cellular anisotropic image segmentation via optimal transport
Y Liu, Y Jin, E Azizi, AJ Blumberg
BMC bioinformatics 24 (1), 480, 2023
Mandates: Chan Zuckerberg Initiative
Deep generative model deciphers derailed trajectories in acute myeloid leukemia
A Nazaret, JL Fan, VP Lavallee, AE Cornish, V Kiseliovas, I Masilionis, ...
bioRxiv, 2023
Mandates: Howard Hughes Medical Institute, Fonds de recherche du Québec - Santé
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