Articles with public access mandates - Mark T. HolderLearn more
Not available anywhere: 1
Taxonomic Supertree Construction with Incertae sedis Taxa
BD Redelings, MT Holder
Bioinformatics and Phylogenetics: Seminal Contributions of Bernard Moret …, 2019
Mandates: US National Science Foundation
Available somewhere: 10
BEAGLE: an application programming interface and high-performance computing library for statistical phylogenetics
DL Ayres, A Darling, DJ Zwickl, P Beerli, MT Holder, PO Lewis, ...
Systematic biology 61 (1), 170-173, 2012
Mandates: US National Institutes of Health
SATe-II: very fast and accurate simultaneous estimation of multiple sequence alignments and phylogenetic trees
K Liu, TJ Warnow, MT Holder, SM Nelesen, J Yu, AP Stamatakis, ...
Systematic biology 61 (1), 90, 2012
Mandates: German Research Foundation
The interface of protein structure, protein biophysics, and molecular evolution
DA Liberles, SA Teichmann, I Bahar, U Bastolla, J Bloom, ...
Protein Science 21 (6), 769-785, 2012
Mandates: US National Institutes of Health
A Dirichlet process prior for estimating lineage-specific substitution rates
TA Heath, MT Holder, JP Huelsenbeck
Molecular biology and evolution 29 (3), 939-955, 2012
Mandates: US National Institutes of Health
Incorporating the speciation process into species delimitation
J Sukumaran, MT Holder, LL Knowles
PLoS Computational Biology 17 (5), e1008924, 2021
Mandates: US National Science Foundation
A supertree pipeline for summarizing phylogenetic and taxonomic information for millions of species
BD Redelings, MT Holder
PeerJ 5, e3058, 2017
Mandates: US National Science Foundation
Copulas and their potential for ecology
S Ghosh, LW Sheppard, MT Holder, TD Loecke, PC Reid, JD Bever, ...
Advances in Ecological Research 62, 409-468, 2020
Mandates: US National Science Foundation, UK Biotechnology and Biological Sciences …
Phylogenetic assessment of filoviruses: how many lineages of M arburg virus?
AT Peterson, MT Holder
Ecology and Evolution 2 (8), 1826-1833, 2012
Mandates: US National Institutes of Health
OpenTree: A Python package for Accessing and Analyzing data from the Open Tree of Life
EJ McTavish, LL Sánchez-Reyes, MT Holder
Systematic Biology 70 (6), 1295-1301, 2021
Mandates: US National Science Foundation
An algorithm for calculating the probability of classes of data patterns on a genealogy
JM Koch, MT Holder
Plos Currents 4, 2012
Mandates: US National Institutes of Health
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