Articles with public access mandates - Tianyin ZhouLearn more
Available somewhere: 12
Absence of a simple code: how transcription factors read the genome
M Slattery, T Zhou, L Yang, ACD Machado, R Gordân, R Rohs
Trends in biochemical sciences 39 (9), 381-399, 2014
Mandates: US National Institutes of Health
Cofactor binding evokes latent differences in DNA binding specificity between Hox proteins
M Slattery, T Riley, P Liu, N Abe, P Gomez-Alcala, I Dror, T Zhou, R Rohs, ...
Cell 147 (6), 1270-1282, 2011
Mandates: US National Institutes of Health, Howard Hughes Medical Institute
Genomic regions flanking E-box binding sites influence DNA binding specificity of bHLH transcription factors through DNA shape
R Gordân, N Shen, I Dror, T Zhou, J Horton, R Rohs, ML Bulyk
Cell reports 3 (4), 1093-1104, 2013
Mandates: US National Institutes of Health
Quantitative modeling of transcription factor binding specificities using DNA shape
T Zhou, N Shen, L Yang, N Abe, J Horton, RS Mann, HJ Bussemaker, ...
Proceedings of the National Academy of Sciences 112 (15), 4654-4659, 2015
Mandates: US National Institutes of Health
Probing DNA shape and methylation state on a genomic scale with DNase I
A Lazarovici, T Zhou, A Shafer, AC Dantas Machado, TR Riley, ...
Proceedings of the National Academy of Sciences 110 (16), 6376-6381, 2013
Mandates: US National Institutes of Health
Deconvolving the recognition of DNA shape from sequence
N Abe, I Dror, L Yang, M Slattery, T Zhou, HJ Bussemaker, R Rohs, ...
Cell 161 (2), 307-318, 2015
Mandates: US National Institutes of Health
DNAshapeR: an R/Bioconductor package for DNA shape prediction and feature encoding
TP Chiu, F Comoglio, T Zhou, L Yang, R Paro, R Rohs
Bioinformatics 32 (8), 1211-1213, 2016
Mandates: US National Science Foundation, US National Institutes of Health
Evolving insights on how cytosine methylation affects protein–DNA binding
AC Dantas Machado, T Zhou, S Rao, P Goel, C Rastogi, A Lazarovici, ...
Briefings in functional genomics 14 (1), 61-73, 2015
Mandates: US National Institutes of Health
TFBSshape: a motif database for DNA shape features of transcription factor binding sites
L Yang, T Zhou, I Dror, A Mathelier, WW Wasserman, R Gordân, R Rohs
Nucleic acids research 42 (D1), D148-D155, 2014
Mandates: US National Institutes of Health
GBshape: a genome browser database for DNA shape annotations
TP Chiu, L Yang, T Zhou, BJ Main, SCJ Parker, SV Nuzhdin, TD Tullius, ...
Nucleic acids research 43 (D1), D103-D109, 2015
Mandates: US National Institutes of Health
Covariation between homeodomain transcription factors and the shape of their DNA binding sites
I Dror, T Zhou, Y Mandel-Gutfreund, R Rohs
Nucleic acids research 42 (1), 430-441, 2014
Mandates: US National Institutes of Health
Analysis of genetic variation indicates DNA shape involvement in purifying selection
X Wang, T Zhou, Z Wunderlich, MT Maurano, AH DePace, SV Nuzhdin, ...
Molecular biology and evolution 35 (8), 1958-1967, 2018
Mandates: US National Institutes of Health
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