Articles with public access mandates - Simon RogersLearn more
Not available anywhere: 1
Deciphering Complex Natural Mixtures through Metabolome Mining of Mass Spectrometry Data: The Plant Specialized Metabolome as a Case Study
JJJ van der Hooft, M Ernst, D Papenberg, KB Kang, IF Kappers, ...
Recent Advances in Polyphenol Research 8, 139-168, 2023
Mandates: US National Science Foundation, Netherlands Organisation for Scientific …
Available somewhere: 64
Feature-based molecular networking in the GNPS analysis environment
LF Nothias, D Petras, R Schmid, K Dührkop, J Rainer, A Sarvepalli, ...
Nature methods 17 (9), 905-908, 2020
Mandates: US National Science Foundation, US Department of Defense, US National …
Topic modeling for untargeted substructure exploration in metabolomics
JJJ van Der Hooft, J Wandy, MP Barrett, KEV Burgess, S Rogers
Proceedings of the National Academy of Sciences 113 (48), 13738-13743, 2016
Mandates: UK Biotechnology and Biological Sciences Research Council, Wellcome Trust
MolNetEnhancer: enhanced molecular networks by integrating metabolome mining and annotation tools
M Ernst, KB Kang, AM Caraballo-Rodríguez, LF Nothias, J Wandy, ...
Metabolites 9 (7), 144, 2019
Mandates: US National Science Foundation, UK Biotechnology and Biological Sciences …
Investigating the correspondence between transcriptomic and proteomic expression profiles using coupled cluster models
S Rogers, M Girolami, W Kolch, KM Waters, T Liu, B Thrall, HS Wiley
Bioinformatics 24 (24), 2894-2900, 2008
Mandates: US National Institutes of Health
ODE parameter inference using adaptive gradient matching with Gaussian processes
F Dondelinger, D Husmeier, S Rogers, M Filippone
Artificial intelligence and statistics, 216-228, 2013
Mandates: UK Engineering and Physical Sciences Research Council
A community resource for paired genomic and metabolomic data mining
MA Schorn, S Verhoeven, L Ridder, F Huber, DD Acharya, AA Aksenov, ...
Nature Chemical Biology 17 (4), 363-368, 2021
Mandates: US National Science Foundation, US National Institutes of Health, Fundação …
Advances in decomposing complex metabolite mixtures using substructure-and network-based computational metabolomics approaches
MA Beniddir, KB Kang, G Genta-Jouve, F Huber, S Rogers, ...
Natural product reports 38 (11), 1967-1993, 2021
Mandates: UK Biotechnology and Biological Sciences Research Council, Agence Nationale …
Ms2lda. org: web-based topic modelling for substructure discovery in mass spectrometry
J Wandy, Y Zhu, JJJ van der Hooft, R Daly, MP Barrett, S Rogers
Bioinformatics 34 (2), 317-318, 2018
Mandates: UK Biotechnology and Biological Sciences Research Council, UK Medical …
MetAssign: probabilistic annotation of metabolites from LC–MS data using a Bayesian clustering approach
R Daly, S Rogers, J Wandy, A Jankevics, KEV Burgess, R Breitling
Bioinformatics 30 (19), 2764-2771, 2014
Mandates: UK Biotechnology and Biological Sciences Research Council
Deciphering complex metabolite mixtures by unsupervised and supervised substructure discovery and semi-automated annotation from MS/MS spectra
S Rogers, CW Ong, J Wandy, M Ernst, L Ridder, JJJ Van Der Hooft
Faraday Discussions 218, 284-302, 2019
Mandates: UK Biotechnology and Biological Sciences Research Council
An Optimal Frequency in Ca2+ Oscillations for Stomatal Closure Is an Emergent Property of Ion Transport in Guard Cells
C Minguet-Parramona, Y Wang, A Hills, S Vialet-Chabrand, H Griffiths, ...
Plant Physiology 170 (1), 33-42, 2016
Mandates: UK Biotechnology and Biological Sciences Research Council
Rapid development of improved data-dependent acquisition strategies
V Davies, J Wandy, S Weidt, JJJ Van Der Hooft, A Miller, R Daly, ...
Analytical chemistry 93 (14), 5676-5683, 2021
Mandates: UK Engineering and Physical Sciences Research Council
Unsupervised discovery and comparison of structural families across multiple samples in untargeted metabolomics
JJJ van der Hooft, J Wandy, F Young, S Padmanabhan, K Gerasimidis, ...
Analytical Chemistry 89 (14), 7569-7577, 2017
Mandates: UK Biotechnology and Biological Sciences Research Council, UK Medical …
Modelling water use efficiency in a dynamic environment: an example using Arabidopsis thaliana
S Vialet-Chabrand, JSA Matthews, O Brendel, MR Blatt, Y Wang, A Hills, ...
Plant Science 251, 65-74, 2016
Mandates: UK Biotechnology and Biological Sciences Research Council, UK Natural …
PiMP my metabolome: an integrated, web-based tool for LC-MS metabolomics data
Y Gloaguen, F Morton, R Daly, R Gurden, S Rogers, J Wandy, D Wilson, ...
Bioinformatics 33 (24), 4007-4009, 2017
Mandates: UK Biotechnology and Biological Sciences Research Council, UK Medical …
Unexpected connections between humidity and ion transport discovered using a model to bridge guard cell-to-leaf scales
Y Wang, A Hills, S Vialet-Chabrand, M Papanatsiou, H Griffiths, S Rogers, ...
The Plant Cell 29 (11), 2921-2939, 2017
Mandates: UK Biotechnology and Biological Sciences Research Council
Predicting host taxonomic information from viral genomes: A comparison of feature representations
F Young, S Rogers, DL Robertson
PLoS computational biology 16 (5), e1007894, 2020
Mandates: UK Medical Research Council
Linking biosynthetic and chemical space to accelerate microbial secondary metabolite discovery
S Soldatou, GH Eldjarn, A Huerta-Uribe, S Rogers, KR Duncan
FEMS microbiology letters 366 (13), fnz142, 2019
Mandates: UK Biotechnology and Biological Sciences Research Council
Per-host DDoS mitigation by direct-control reinforcement learning
KA Simpson, S Rogers, DP Pezaros
IEEE Transactions on Network and Service Management 17 (1), 103-117, 2019
Mandates: UK Engineering and Physical Sciences Research Council, European Commission
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