Articles with public access mandates - Daniel FalushLearn more
Available somewhere: 47
A draft sequence of the Neandertal genome
RE Green, J Krause, AW Briggs, T Maricic, U Stenzel, M Kircher, ...
science 328 (5979), 710-722, 2010
Mandates: US National Institutes of Health, Howard Hughes Medical Institute
Roary: rapid large-scale prokaryote pan genome analysis
AJ Page, CA Cummins, M Hunt, VK Wong, S Reuter, MTG Holden, ...
Bioinformatics 31 (22), 3691-3693, 2015
Mandates: UK Medical Research Council, Wellcome Trust
Inferring weak population structure with the assistance of sample group information
MJ Hubisz, D Falush, M Stephens, JK Pritchard
Molecular ecology resources 9 (5), 1322-1332, 2009
Mandates: US National Institutes of Health, Howard Hughes Medical Institute, Science …
Sex and virulence in Escherichia coli: an evolutionary perspective
T Wirth, D Falush, R Lan, F Colles, P Mensa, LH Wieler, H Karch, ...
Molecular microbiology 60 (5), 1136-1151, 2006
Mandates: German Research Foundation
Composition, variability, and temporal stability of the intestinal microbiota of the elderly
MJ Claesson, S Cusack, O O'Sullivan, R Greene-Diniz, H de Weerd, ...
Proceedings of the National Academy of Sciences 108 (supplement_1), 4586-4591, 2011
Mandates: Science Foundation Ireland
Inference of population structure using dense haplotype data
DJ Lawson, G Hellenthal, S Myers, D Falush
PLoS genetics 8 (1), e1002453, 2012
Mandates: Science Foundation Ireland
A genetic atlas of human admixture history
G Hellenthal, GBJ Busby, G Band, JF Wilson, C Capelli, D Falush, ...
science 343 (6172), 747-751, 2014
Mandates: US National Institutes of Health, UK Biotechnology and Biological Sciences …
The fine-scale genetic structure of the British population
S Leslie, B Winney, G Hellenthal, D Davison, A Boumertit, T Day, K Hutnik, ...
Nature 519 (7543), 309-314, 2015
Mandates: US National Institutes of Health, National Health and Medical Research …
A tutorial on how not to over-interpret STRUCTURE and ADMIXTURE bar plots
DJ Lawson, L Van Dorp, D Falush
Nature communications 9 (1), 3258, 2018
Mandates: UK Engineering and Physical Sciences Research Council, UK Medical Research …
Historical variations in mutation rate in an epidemic pathogen, Yersinia pestis
Y Cui, C Yu, Y Yan, D Li, Y Li, T Jombart, LA Weinert, Z Wang, Z Guo, ...
Proceedings of the National Academy of Sciences 110 (2), 577-582, 2013
Mandates: Science Foundation Ireland
Genome-wide association study identifies vitamin B5 biosynthesis as a host specificity factor in Campylobacter
SK Sheppard, X Didelot, G Meric, A Torralbo, KA Jolley, DJ Kelly, ...
Proceedings of the national academy of sciences 110 (29), 11923-11927, 2013
Mandates: UK Biotechnology and Biological Sciences Research Council, UK Medical …
RADpainter and fineRADstructure: Population Inference from RADseq Data
M Malinsky, E Trucchi, DJ Lawson, D Falush
Molecular biology and evolution 35 (5), 1284-1290, 2018
Mandates: Austrian Science Fund, UK Medical Research Council, Wellcome Trust
Helicobacter pylori genome evolution during human infection
L Kennemann, X Didelot, T Aebischer, S Kuhn, B Drescher, M Droege, ...
Proceedings of the National Academy of Sciences 108 (12), 5033-5038, 2011
Mandates: US National Institutes of Health, German Research Foundation, Science …
Inference of homologous recombination in bacteria using whole-genome sequences
X Didelot, D Lawson, A Darling, D Falush
Genetics 186 (4), 1435-1449, 2010
Mandates: Science Foundation Ireland
Recombination and Population Structure in Salmonella enterica
X Didelot, R Bowden, T Street, T Golubchik, C Spencer, G McVean, ...
PLoS genetics 7 (7), e1002191, 2011
Mandates: Science Foundation Ireland
Genomic Changes during Chronic Helicobacter pylori Infection
C Kraft, A Stack, C Josenhans, E Niehus, G Dietrich, P Correa, JG Fox, ...
Journal of bacteriology 188 (1), 249-254, 2006
Mandates: German Research Foundation
Rapid evolution of distinct Helicobacter pylori subpopulations in the Americas
K Thorell, K Yahara, E Berthenet, DJ Lawson, J Mikhail, I Kato, A Mendez, ...
PLoS genetics 13 (2), e1006546, 2017
Mandates: US National Institutes of Health, UK Medical Research Council, Wellcome Trust
Epidemic Clones, Oceanic Gene Pools, and Eco-LD in the Free Living Marine Pathogen Vibrio parahaemolyticus
Y Cui, X Yang, X Didelot, C Guo, D Li, Y Yan, Y Zhang, Y Yuan, H Yang, ...
Molecular biology and evolution 32 (6), 1396-1410, 2015
Mandates: National Natural Science Foundation of China, UK Biotechnology and …
Analysis of 1321 Eubacterium rectale genomes from metagenomes uncovers complex phylogeographic population structure and subspecies functional adaptations
N Karcher, E Pasolli, F Asnicar, KD Huang, A Tett, S Manara, F Armanini, ...
Genome biology 21, 1-27, 2020
Mandates: US National Institutes of Health, European Commission, Government of Italy
Natural Transformation of Helicobacter pylori Involves the Integration of Short DNA Fragments Interrupted by Gaps of Variable Size
EA Lin, XS Zhang, SM Levine, SR Gill, D Falush, MJ Blaser
PLoS pathogens 5 (3), e1000337, 2009
Mandates: US National Institutes of Health
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