Articles with public access mandates - Vladimir ReinharzLearn more
Not available anywhere: 2
Advances in parameter estimation for mathematical models of hepatitis C viral kinetics
V Reinharz, A Churkin, H Dahari, D Barash
AIP Conference Proceedings 2849 (1), 2023
Mandates: US National Institutes of Health
HCVMultiscaleDyn: A simulator for the multiscale model of hepatitis C virus dynamics
A Churkin, V Reinharz, H Dahari, D Barash
AIP Conference Proceedings 1978 (1), 2018
Mandates: US National Institutes of Health
Available somewhere: 24
Design of RNAs: comparing programs for inverse RNA folding
A Churkin, MD Retwitzer, V Reinharz, Y Ponty, J Waldispühl, D Barash
Briefings in bioinformatics 19 (2), 350-358, 2018
Mandates: Austrian Science Fund, Natural Sciences and Engineering Research Council of …
Towards 3D structure prediction of large RNA molecules: an integer programming framework to insert local 3D motifs in RNA secondary structure
V Reinharz, F Major, J Waldispühl
Bioinformatics 28 (12), i207-i214, 2012
Mandates: US National Institutes of Health
Mining for recurrent long-range interactions in RNA structures reveals embedded hierarchies in network families
V Reinharz, A Soulé, E Westhof, J Waldispühl, A Denise
Nucleic acids research 46 (8), 3841-3851, 2018
Mandates: Canadian Institutes of Health Research, Fonds de recherche du Québec - Santé …
Augmented base pairing networks encode RNA-small molecule binding preferences
C Oliver, V Mallet, RS Gendron, V Reinharz, WL Hamilton, N Moitessier, ...
Nucleic acids research 48 (14), 7690-7699, 2020
Mandates: Canadian Institutes of Health Research, Genome Canada, Natural Sciences and …
RNA-MoIP: prediction of RNA secondary structure and local 3D motifs from sequence data
J Yao, V Reinharz, F Major, J Waldispühl
Nucleic acids research 45 (W1), W440-W444, 2017
Mandates: US National Institutes of Health, Canadian Institutes of Health Research …
Understanding hepatitis B virus dynamics and the antiviral effect of interferon alpha treatment in humanized chimeric mice
V Reinharz, Y Ishida, M Tsuge, K Durso-Cain, TL Chung, C Tateno, ...
Journal of virology 95 (14), 10.1128/jvi. 00492-20, 2021
Mandates: US Department of Energy, US National Institutes of Health
Automated, customizable and efficient identification of 3D base pair modules with BayesPairing
R Sarrazin-Gendron, V Reinharz, CG Oliver, N Moitessier, J Waldispühl
Nucleic acids research 47 (7), 3321-3332, 2019
Mandates: Canadian Institutes of Health Research, Genome Canada, Natural Sciences and …
Numerical schemes for solving and optimizing multiscale models with age of hepatitis C virus dynamics
V Reinharz, H Dahari, D Barash
Mathematical biosciences 300, 1-13, 2018
Mandates: US National Institutes of Health
Finding recurrent RNA structural networks with fast maximal common subgraphs of edge-colored graphs
A Soulé, V Reinharz, R Sarrazin-Gendron, A Denise, J Waldispühl
PLoS computational biology 17 (5), e1008990, 2021
Mandates: Canadian Institutes of Health Research, Genome Canada, Natural Sciences and …
A parameter estimation method for multiscale models of hepatitis C virus dynamics
V Reinharz, A Churkin, S Lewkiewicz, H Dahari, D Barash
Bulletin of mathematical biology 81 (10), 3675-3721, 2019
Mandates: US National Institutes of Health, Fonds de recherche du Québec - Nature et …
A robust and efficient numerical method for RNA-mediated viral dynamics
V Reinharz, A Churkin, H Dahari, D Barash
Frontiers in applied mathematics and statistics 3, 20, 2017
Mandates: US National Institutes of Health
On the emergence of structural complexity in RNA replicators
CG Oliver, V Reinharz, J Waldispühl
Rna 25 (12), 1579-1591, 2019
Mandates: Natural Sciences and Engineering Research Council of Canada, Fonds de …
Combining structure probing data on RNA mutants with evolutionary information reveals RNA-binding interfaces
V Reinharz, Y Ponty, J Waldispühl
Nucleic acids research 44 (11), e104-e104, 2016
Mandates: Natural Sciences and Engineering Research Council of Canada
Modeling the Interplay between HDV and HBV in Chronic HDV/HBV Patients
A Mhlanga, R Zakh, A Churkin, V Reinharz, JS Glenn, O Etzion, SJ Cotler, ...
Mathematics 10 (20), 3917, 2022
Mandates: US National Institutes of Health
Modelling Agile Backlogs as Composable Artifacts to support Developers and Product Owners.
S Mosser, C Pulgar, V Reinhar
J. Object Technol. 21 (3), 3:1-15, 2022
Mandates: Natural Sciences and Engineering Research Council of Canada
Efficient methods for parameter estimation of ordinary and partial differential equation models of viral hepatitis kinetics
A Churkin, S Lewkiewicz, V Reinharz, H Dahari, D Barash
Mathematics 8 (9), 1483, 2020
Mandates: US National Institutes of Health
Modeling suggests that virion production cycles within individual cells is key to understanding acute hepatitis B virus infection kinetics
A Hailegiorgis, Y Ishida, N Collier, M Imamura, Z Shi, V Reinharz, ...
PLOS Computational Biology 19 (8), e1011309, 2023
Mandates: US National Institutes of Health
On the predictibility of A-minor motifs from their local contexts
C Gianfrotta, V Reinharz, O Lespinet, D Barth, A Denise
RNA biology 19 (1), 1208-1227, 2022
Mandates: Fonds de recherche du Québec - Santé, Natural Sciences and Engineering …
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