Articles with public access mandates - John YatesLearn more
Not available anywhere: 23
Review
PatternLab: from mass spectra to label‐free differential shotgun proteomics
PC Carvalho, JSG Fischer, T Xu, JR Yates III, VC Barbosa
Current Protocols in Bioinformatics 40 (1), 13.19. 1-13.19. 18, 2012
Mandates: US National Institutes of Health
Review
Intellectual abilities in tuberous sclerosis complex: risk factors and correlates from the Tuberous Sclerosis 2000 Study
PF Bolton, M Clifford, C Tye, C Maclean, A Humphrey, K Le Marechal, ...
Psychological medicine 45 (11), 2321-2331, 2015
Mandates: UK Medical Research Council, National Institute for Health Research, UK
Review
Stable isotope labeling of mammals (SILAM) for in vivo quantitative proteomic analysis
N Rauniyar, DB McClatchy, JR Yates III
Methods 61 (3), 260-268, 2013
Mandates: US National Institutes of Health
Review
EThcD and 213 nm UVPD for top-down analysis of bovine seminal plasma proteoforms on electrophoretic and chromatographic time frames
FP Gomes, JK Diedrich, AJ Saviola, E Memili, AA Moura, JR Yates III
Analytical chemistry 92 (4), 2979-2987, 2020
Mandates: US National Institutes of Health
Review
A hybrid method for peptide identification using integer linear optimization, local database search, and quadrupole time-of-flight or OrbiTrap tandem mass spectrometry
PA DiMaggio, Jr, CA Floudas, B Lu, JR Yates, III
Journal of proteome research 7 (4), 1584-1593, 2008
Mandates: US National Institutes of Health
Review
Expression profile of Rhipicephalus microplus vitellogenin receptor during oogenesis
A Seixas, MF Alzugaray, L Tirloni, LF Parizi, AFM Pinto, NW Githaka, ...
Ticks and tick-borne diseases 9 (1), 72-81, 2018
Mandates: US National Institutes of Health
Review
Application of mass spectrometry to study proteomics and interactomics in cystic fibrosis
WE Balch, JR Yates
Cystic Fibrosis: Diagnosis and Protocols, Volume II: Methods and Resources …, 2011
Mandates: US National Institutes of Health
Review
Blood anticlotting activity of a Rhipicephalus microplus cathepsin L-like enzyme
MA Xavier, L Tirloni, R Torquato, A Tanaka, AFM Pinto, JK Diedrich, ...
Biochimie 163, 12-20, 2019
Mandates: US National Institutes of Health
Review
Arg-tRNA synthetase links inflammatory metabolism to RNA splicing and nuclear trafficking via SRRM2
H Cui, JK Diedrich, DC Wu, JJ Lim, RM Nottingham, JJ Moresco, ...
Nature cell biology 25 (4), 592-603, 2023
Mandates: US National Institutes of Health, Canadian Institutes of Health Research …
Review
Proteomics of Rat Lungs Infected by Cryptococcus gattii Reveals a Potential Warburg-like Effect
RL Rosa, M Berger, L Santi, D Driemeier, P Barros Terraciano, ...
Journal of proteome research 18 (11), 3885-3895, 2019
Mandates: US National Institutes of Health
Review
Tick Gené’s organ engagement in lipid metabolism revealed by a combined transcriptomic and proteomic approach
MA Xavier, L Tirloni, AFM Pinto, JK Diedrich, JR Yates III, S Gonzales, ...
Ticks and tick-borne diseases 10 (4), 787-797, 2019
Mandates: US National Institutes of Health, Government of Argentina
Review
Comparative Proteomic Analysis of Murine Cutaneous Lesions Induced by Leishmania amazonensis or Leishmania major
F Negrao, S Giorgio, MN Eberlin, JR Yates III
ACS infectious diseases 5 (8), 1295-1305, 2019
Mandates: US National Institutes of Health
Review
PACOM: A versatile tool for integrating, filtering, visualizing, and comparing multiple large mass spectrometry proteomics data sets
S Martínez-Bartolomé, JA Medina-Aunon, MA López-García, ...
Journal of proteome research 17 (4), 1547-1558, 2018
Mandates: US National Institutes of Health, Government of Spain
Review
Tandem Mass Tag Proteomic Analysis of in Vitro and in Vivo Models of Cutaneous Leishmaniasis Reveals Parasite-Specific and Nonspecific Modulation of …
F Negrao, JK Diedrich, S Giorgio, MN Eberlin, JR Yates III
ACS infectious diseases 5 (12), 2136-2147, 2019
Mandates: US National Institutes of Health
Review
The fragile X messenger ribonucleoprotein 1 participates in axon guidance mediated by the Wnt/planar cell polarity pathway
P Marfull-Oromí, K Onishi, X Han, JR Yates III, Y Zou
Neuroscience 508, 76-86, 2023
Mandates: US National Institutes of Health
Review
Intrinsic mesoscale properties of a Polycomb protein underpin heterochromatin fidelity
S Lee, S Abini-Agbomson, DS Perry, A Goodman, B Rao, MY Huang, ...
Nature Structural & Molecular Biology 30 (7), 891-901, 2023
Mandates: US National Institutes of Health
Review
Large-Scale Differential Proteome Analysis in Plasmodium falciparum Under Drug Treatment
JH Prieto, E Fischer, S Koncarevic, J Yates, K Becker
Parasite Genomics Protocols, 269-279, 2015
Mandates: German Research Foundation
Review
mRNA-LNP HIV-1 trimer boosters elicit precursors to broad neutralizing antibodies
Z Xie, YC Lin, JM Steichen, G Ozorowski, S Kratochvil, R Ray, JL Torres, ...
Science 384 (6697), eadk0582, 2024
Mandates: Bill & Melinda Gates Foundation
Review
Heterologous prime-boost vaccination drives early maturation of HIV broadly neutralizing antibody precursors in humanized mice
CA Cottrell, X Hu, JH Lee, P Skog, S Luo, CT Flynn, KR McKenney, ...
Science Translational Medicine 16 (748), eadn0223, 2024
Mandates: Bill & Melinda Gates Foundation, Howard Hughes Medical Institute
Review
A quantitation module for isotope-labeled peptides integrated into PatternLab for proteomics
MDM Santos, DB Lima, ARF Silva, LU Kurt, MA Clasen, AFM Pinto, ...
Journal of proteomics 202, 103371, 2019
Mandates: US National Institutes of Health
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