DIA-NN: neural networks and interference correction enable deep proteome coverage in high throughput V Demichev, CB Messner, SI Vernardis, KS Lilley, M Ralser Nature methods 17 (1), 41-44, 2020 | 1285 | 2020 |
Ultra-high-throughput clinical proteomics reveals classifiers of COVID-19 infection CB Messner, V Demichev, D Wendisch, L Michalick, M White, A Freiwald, ... Cell systems 11 (1), 11-24. e4, 2020 | 494 | 2020 |
A time-resolved proteomic and prognostic map of COVID-19 V Demichev, P Tober-Lau, O Lemke, T Nazarenko, C Thibeault, ... Cell systems 12 (8), 780-794. e7, 2021 | 150 | 2021 |
Role of oxidative stress in sclerotial differentiation and aflatoxin B1 biosynthesis in Aspergillus flavus K Grintzalis, SI Vernardis, MI Klapa, CD Georgiou Applied and Environmental Microbiology 80 (18), 5561-5571, 2014 | 119 | 2014 |
Oxidized alginate hydrogels with the GHK peptide enhance cord blood mesenchymal stem cell osteogenesis: A paradigm for metabolomics-based evaluation of biomaterial design ME Klontzas, S Reakasame, R Silva, JCF Morais, S Vernardis, ... Acta biomaterialia 88, 224-240, 2019 | 64 | 2019 |
Human embryonic and induced pluripotent stem cells maintain phenotype but alter their metabolism after exposure to ROCK inhibitor SI Vernardis, K Terzoudis, N Panoskaltsis, A Mantalaris Scientific reports 7 (1), 42138, 2017 | 58 | 2017 |
Metabolomics analysis of the osteogenic differentiation of umbilical cord blood mesenchymal stem cells reveals differential sensitivity to osteogenic agents ME Klontzas, SI Vernardis, M Heliotis, E Tsiridis, A Mantalaris Stem cells and development 26 (10), 723-733, 2017 | 49 | 2017 |
A proteomic survival predictor for COVID-19 patients in intensive care V Demichev, P Tober-Lau, T Nazarenko, O Lemke, S Kaur Aulakh, ... PLOS Digital Health 1 (1), e0000007, 2022 | 46 | 2022 |
Metabolic profiling reveals that time related physiological changes in mammalian cell perfusion cultures are bioreactor scale independent SI Vernardis, CT Goudar, MI Klapa Metabolic engineering 19, 1-9, 2013 | 43 | 2013 |
Designing a bio-inspired biomimetic in vitro system for the optimization of ex vivo studies of pancreatic cancer S Totti, SI Vernardis, L Meira, PA Pérez-Mancera, E Costello, W Greenhalf, ... Drug discovery today 22 (4), 690-701, 2017 | 34 | 2017 |
Microbe capture by splenic macrophages triggers sepsis via T cell-death-dependent neutrophil lifespan shortening M Ioannou, D Hoving, IV Aramburu, MI Temkin, NM De Vasconcelos, ... Nature communications 13 (1), 4658, 2022 | 23 | 2022 |
Clinical classifiers of COVID-19 infection from novel ultra-high-throughput proteomics CB Messner, V Demichev, D Wendisch, L Michalick, M White, A Freiwald, ... MedRxiv, 2020.04. 27.20081810, 2020 | 17 | 2020 |
Functional proteomic profiling links deficient DNA clearance with increased mortality in individuals with severe COVID-19 pneumonia IV Aramburu, D Hoving, SI Vernardis, MCF Tin, M Ioannou, MI Temkin, ... Immunity 55 (12), 2436-2453. e5, 2022 | 14 | 2022 |
A time-resolved proteomic and diagnostic map characterizes COVID-19 disease progression and predicts outcome V Demichev, P Tober-Lau, T Nazarenko, C Thibeault, H Whitwell, ... MedRxiv, 2020.11. 09.20228015, 2020 | 13 | 2020 |
The impact of succinate trace on pWW0 and ortho-cleavage pathway transcription in Pseudomonas putida mt-2 during toluene biodegradation A Tsipa, M Koutinas, SI Vernardis, A Mantalaris Bioresource technology 234, 397-405, 2017 | 13 | 2017 |
The impact of acute nutritional interventions on the plasma proteome SI Vernardis, V Demichev, O Lemke, NM Grüning, C Messner, M White, ... The Journal of Clinical Endocrinology & Metabolism 108 (8), 2087-2098, 2023 | 8 | 2023 |
DIA-NN: Neural networks and interference correction enable deep coverage in high-throughput proteomics V Demichev, CB Messner, SI Vernardis, KS Lilley, M Ralser In: bioRxiv, 282699, 2018 | 7 | 2018 |
SIGNR1 promotes immune dysfunction in systemic candidiasis by modulating neutrophil lifespan via T cell-derived histones and G-CSF M Ioannou, D Hoving, IV Aramburu, NM De Vasconcelos, MI Temkin, ... bioRxiv, 2021.08. 09.455510, 2021 | 3 | 2021 |
Acute caloric restriction acts on the plasma proteome and reveals Apolipoprotein C1 as a signal of nutritional state and metabolic disease S Vernardis, V Demichev, O Lemke, NM Grüning, C Messner, M White, ... | 2 | 2022 |
Functional proteomic profiling links deficient DNA clearance to mortality in patients with severe COVID-19 pneumonia IV Aramburu, D Hoving, SI Vernardis, M Tin, V Demichev, ET Helbig, ... medRxiv, 2022.01. 25.22269616, 2022 | 2 | 2022 |