Articles with public access mandates - Lee S. KatzLearn more
Available somewhere: 26
Whole genome-based population biology and epidemiological surveillance of Listeria monocytogenes
A Moura, A Criscuolo, H Pouseele, MM Maury, A Leclercq, C Tarr, ...
Nature microbiology 2 (2), 16185, 2017
Mandates: Swiss National Science Foundation, National Institute of Health and Medical …
Implementation of nationwide real-time whole-genome sequencing to enhance listeriosis outbreak detection and investigation
BR Jackson, C Tarr, E Strain, KA Jackson, A Conrad, H Carleton, LS Katz, ...
Reviews of Infectious Diseases 63 (3), 380-386, 2016
Mandates: US National Institutes of Health, US Department of Agriculture
SNVPhyl: a single nucleotide variant phylogenomics pipeline for microbial genomic epidemiology
A Petkau, P Mabon, C Sieffert, NC Knox, J Cabral, M Iskander, M Iskander, ...
Microbial genomics 3 (6), e000116, 2017
Mandates: Genome Canada
Evolutionary dynamics of Vibrio cholerae O1 following a single-source introduction to Haiti
LS Katz, A Petkau, J Beaulaurier, S Tyler, ES Antonova, MA Turnsek, ...
MBio 4 (4), 2013
Mandates: US National Institutes of Health
Comparative analysis reveals signatures of differentiation amid genomic polymorphism in Lake Malawi cichlids
YHE Loh, LS Katz, MC Mims, TD Kocher, SV Yi, JT Streelman
Genome biology 9 (7), 1-12, 2008
Mandates: US National Institutes of Health
A comparative analysis of the Lyve-SET phylogenomics pipeline for genomic epidemiology of foodborne pathogens
LS Katz, T Griswold, AJ Williams-Newkirk, D Wagner, A Petkau, C Sieffert, ...
Frontiers in microbiology 8, 375, 2017
Mandates: Genome Canada
Genome sequences for six Rhodanobacter strains, isolated from soils and the terrestrial subsurface, with variable denitrification capabilities
JE Kostka, SJ Green, L Rishishwar, O Prakash, LS Katz, ...
Journal of Bacteriology 194 (16), 4461-4462, 2012
Mandates: US National Institutes of Health
Benchmark datasets for phylogenomic pipeline validation, applications for foodborne pathogen surveillance
RE Timme, H Rand, M Shumway, EK Trees, M Simmons, R Agarwala, ...
PeerJ 5, e3893, 2017
Mandates: US National Institutes of Health, US Department of Agriculture
Use of Whole Genome Sequencing by the Federal Interagency Collaboration for Genomics for Food and Feed Safety in the United States
EL Stevens, HA Carleton, J Beal, GE Tillman, RL Lindsey, AC Lauer, ...
Journal of Food Protection 85 (5), 755-772, 2022
Mandates: US National Institutes of Health, US Department of Agriculture
Comparison of classical multi-locus sequence typing software for next-generation sequencing data
AJ Page, NF Alikhan, HA Carleton, T Seemann, JA Keane, LS Katz
Microbial Genomics, 2017
Mandates: UK Medical Research Council, Wellcome Trust
Phylodynamic analysis of clinical and environmental Vibrio cholerae isolates from Haiti reveals diversification driven by positive selection
T Azarian, A Ali, JA Johnson, D Mohr, M Prosperi, NM Veras, M Jubair, ...
MBio 5 (6), 2014
Mandates: US National Institutes of Health
Determination of evolutionary relationships of outbreak-associated Listeria monocytogenes strains of serotypes 1/2a and 1/2b by whole-genome sequencing
TM Bergholz, HC den Bakker, LS Katz, BJ Silk, KA Jackson, Z Kucerova, ...
Applied and environmental microbiology 82 (3), 928, 2016
Mandates: US Department of Agriculture
Environmental Surveillance for Toxigenic Vibrio cholerae in Surface Waters of Haiti
AM Kahler, BJ Haley, A Chen, BJ Mull, CL Tarr, M Turnsek, LS Katz, ...
The American journal of tropical medicine and hygiene 92 (1), 118-125, 2015
Mandates: US National Institutes of Health
Complete genome sequence of Vibrio parahaemolyticus environmental strain UCM-V493
SS Kalburge, SW Polson, KB Crotty, L Katz, M Turnsek, CL Tarr, ...
Genome announcements 2 (2), 2014
Mandates: US National Institutes of Health
Future-proofing and maximizing the utility of metadata: The PHA4GE SARS-CoV-2 contextual data specification package
EJ Griffiths, RE Timme, CI Mendes, AJ Page, NF Alikhan, D Fornika, ...
Gigascience 11, giac003, 2022
Mandates: Bill & Melinda Gates Foundation, US National Institutes of Health, Genome …
Natural selection governs local, but not global, evolutionary gene coexpression networks in Caenorhabditis elegans
IK Jordan, LS Katz, DR Denver, JT Streelman
BMC systems biology 2 (1), 1-11, 2008
Mandates: US National Institutes of Health
The PHA4GE SARS-CoV-2 contextual data specification for open genomic epidemiology
EJ Griffiths, RE Timme, AJ Page, NF Alikhan, D Fornika, F Maguire, ...
MDPI AG, 2020
Mandates: Bill & Melinda Gates Foundation, Genome Canada, Fundação para a Ciência e a …
Genomic basis of a polyagglutinating isolate of Neisseria meningitidis
L Rishishwar, LS Katz, NV Sharma, L Rowe, M Frace, JD Thomas, ...
Journal of bacteriology 194 (20), 5649, 2012
Mandates: US National Institutes of Health
Molecular characterization of circulating Salmonella Typhi strains in an urban informal settlement in Kenya
C Ochieng, JC Chen, MP Osita, LS Katz, T Griswold, V Omballa, E Ng’eno, ...
PLOS Neglected Tropical Diseases 16 (8), e0010704, 2022
Mandates: Bill & Melinda Gates Foundation, Wellcome Trust
Genome sequences of Vibrio navarrensis, a potential human pathogen
LM Gladney, LS Katz, KM Knipe, LA Rowe, AB Conley, L Rishishwar, ...
Genome announcements 2 (6), 2014
Mandates: US National Institutes of Health
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