Articles with public access mandates - Theodore PakLearn more
Available somewhere: 19
Interpreting cancer genomes using systematic host network perturbations by tumour virus proteins
O Rozenblatt-Rosen, RC Deo, M Padi, G Adelmant, MA Calderwood, ...
Nature 487 (7408), 491-495, 2012
Mandates: US National Institutes of Health
Epigenomic characterization of Clostridioides difficile finds a conserved DNA methyltransferase that mediates sporulation and pathogenesis
PH Oliveira, JW Ribis, EM Garrett, D Trzilova, A Kim, O Sekulovic, ...
Nature microbiology 5 (1), 166-180, 2020
Mandates: US National Institutes of Health
Genome Plasticity of agr-Defective Staphylococcus aureus during Clinical Infection
DR Altman, MJ Sullivan, KI Chacko, D Balasubramanian, TR Pak, ...
Infection and Immunity 86 (10), 10.1128/iai. 00331-18, 2018
Mandates: US National Institutes of Health
Comprehensive innate immune profiling of chikungunya virus infection in pediatric cases
D Michlmayr, TR Pak, AH Rahman, EAD Amir, EY Kim, S Kim‐Schulze, ...
Molecular systems biology 14 (8), e7862, 2018
Mandates: US National Institutes of Health
High-dimensional CyTOF analysis of dengue virus–infected human DCs reveals distinct viral signatures
RE Hamlin, A Rahman, TR Pak, K Maringer, I Mena, D Bernal-Rubio, ...
JCI insight 2 (13), 2017
Mandates: US Department of Defense, US National Institutes of Health, Wellcome Trust
Whole-genome sequencing identifies emergence of a quinolone resistance mutation in a case of Stenotrophomonas maltophilia bacteremia
TR Pak, DR Altman, O Attie, R Sebra, CL Hamula, M Lewis, G Deikus, ...
Antimicrobial agents and chemotherapy 59 (11), 7117-7120, 2015
Mandates: US National Institutes of Health
A complete genome screening program of clinical methicillin-resistant Staphylococcus aureus isolates identifies the origin and progression of a neonatal intensive care unit …
MJ Sullivan, DR Altman, KI Chacko, B Ciferri, E Webster, TR Pak, ...
Journal of clinical microbiology 57 (12), 10.1128/jcm. 01261-19, 2019
Mandates: US National Institutes of Health
Genetic basis of emerging vancomycin, linezolid, and daptomycin heteroresistance in a case of persistent Enterococcus faecium bacteremia
KI Chacko, MJ Sullivan, C Beckford, DR Altman, B Ciferri, TR Pak, ...
Antimicrobial Agents and Chemotherapy 62 (4), 10.1128/aac. 02007-17, 2018
Mandates: US National Institutes of Health
ChromoZoom: a flexible, fluid, web-based genome browser
TR Pak, FP Roth
Bioinformatics 29 (3), 384-386, 2013
Mandates: US National Institutes of Health
Genomic confirmation of vancomycin-resistant Enterococcus transmission from deceased donor to liver transplant recipient
A Bashir, O Attie, M Sullivan, R Sebra, KV Singh, D Altman, T Pak, J Dutta, ...
PloS one 12 (3), e0170449, 2017
Mandates: US National Institutes of Health
Real-time investigation of a large nosocomial influenza A outbreak informed by genomic epidemiology
W Javaid, J Ehni, AS Gonzalez-Reiche, JM Carreño, E Hirsch, J Tan, ...
Clinical Infectious Diseases 73 (11), e4375-e4383, 2021
Mandates: US National Institutes of Health
Why clinical trials are terminated
TR Pak, MD Rodriguez, FP Roth
BioRxiv, 021543, 2015
Mandates: US National Institutes of Health
PathoSPOT genomic epidemiology reveals under-the-radar nosocomial outbreaks
A Berbel Caban, TR Pak, A Obla, AC Dupper, KI Chacko, L Fox, A Mills, ...
Genome Medicine 12, 1-11, 2020
Mandates: US National Institutes of Health
Discontinuation of universal admission testing for SARS-CoV-2 and hospital-onset COVID-19 infections in England and Scotland
TR Pak, C Rhee, R Wang, M Klompas
JAMA Internal Medicine 183 (8), 877-880, 2023
Mandates: US National Institutes of Health, Patient-Centered Outcomes Research Institute
Estimating Local Costs Associated With Clostridium difficile Infection Using Machine Learning and Electronic Medical Records
TR Pak, KI Chacko, T O’Donnell, SS Huprikar, H van Bakel, A Kasarskis, ...
infection control & hospital epidemiology 38 (12), 1478-1486, 2017
Mandates: US National Institutes of Health
Timing and spectrum of antibiotic treatment for suspected sepsis and septic shock: why so controversial?
TR Pak, C Rhee, M Klompas
Infectious Disease Clinics of North America 36 (4), 719-733, 2022
Mandates: US National Institutes of Health
Epigenomic and functional characterization of a core DNA methyltransferase in the human pathogen Clostridium difficile
PH Oliveira, JW Ribis, EM Garrett, D Trzilova, A Kim, O Sekulovic, ...
bioRxiv, 398891, 2018
Mandates: US National Institutes of Health
Complete genome screening of clinical MRSA isolates identifies lineage diversity and provides full resolution of transmission and outbreak events
MJ Sullivan, DR Altman, KI Chacko, B Ciferri, E Webster, TR Pak, ...
BioRxiv, 522078, 2019
Mandates: US National Institutes of Health
PathoSPOT genomic surveillance reveals under the radar outbreaks of methicillin resistant S. aureus bloodstream infections
AB Caban, T Pak, A Obla, A Dupper, KI Chacko, L Fox, A Mills, B Ciferri, ...
medRxiv, 2020.05. 11.20098103, 2020
Mandates: US National Institutes of Health
Publication and funding information is determined automatically by a computer program